PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0139s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 296aa    MW: 33954.7 Da    PI: 6.6487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0139s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046162186123
                           EEETTTTEEESSHHHHHHHHHH..T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                           + C+ C+k ++  +++++H+++  H
  Sphfalx0139s0016.1.p 162 FYCELCNKQYKLAMEFETHLSSydH 186
                           79*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.5E-1865110IPR000467G-patch domain
PROSITE profilePS5017416.92167112IPR000467G-patch domain
PfamPF015855.3E-1668108IPR000467G-patch domain
SuperFamilySSF576672.47E-5159199No hitNo description
PfamPF121717.8E-6162189IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501578.559162191IPR007087Zinc finger, C2H2
PROSITE patternPS000280164186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDSGRRQGGG YALFAQEQRQ REREQAYADS LSEDLGEEFQ LPISHRPVEN LDTSHLEQAT  60
LDTQLSSSNV GFRLLQKMGW KGKGLGKDEQ GIVEPIKAGV RDAKLGVGKQ EQDDFYTAEE  120
NIQRKKLEVE LEETEEQAKK REVEAEREHK IQSEVKEIHR VFYCELCNKQ YKLAMEFETH  180
LSSYDHNHKK RFKEMRESQS SRSRDDRQRR EQARQDKEMA RFSQIAEAQR QQQEAKNAGS  240
STTTEIVQEQ RTSLKFGFGS KPVASKMSLG LMTKKSKVAT KVAAVFRDDS DEEAQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357553.11e-172G patch domain-containing protein 8-like isoform X1
RefseqXP_024357555.11e-172G patch domain-containing protein 8-like isoform X1
RefseqXP_024357556.11e-172G patch domain-containing protein 8-like isoform X1
TrEMBLA0A2K1IUC01e-171A0A2K1IUC0_PHYPA; Uncharacterized protein
STRINGPP1S9_212V6.31e-172(Physcomitrella patens)