PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0138s0013.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 858aa    MW: 92762.8 Da    PI: 5.851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0138s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.6e-0894117327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + +C ff++ G+C  Gd+C+F Hgp
  Sphfalx0138s0013.1.p  94 RTPCYFFSQ-GYCAKGDKCPFLHGP 117
                           689******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.071342IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-41441IPR000571Zinc finger, CCCH-type
PfamPF156631.5E-111469No hitNo description
PROSITE profilePS5010310.9444470IPR000571Zinc finger, CCCH-type
SMARTSM003560.834669IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.24891118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-691116IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-592117IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-594117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-496117IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MAQAQTSRDD DALKKKTDCV YFLASPLTCK KGNDCEFRHS ESARVNPRDC WYWLAGTCLM  60
PDCPFRHPPL EGRTAGGATA GPPVPGATGV NKARTPCYFF SQGYCAKGDK CPFLHGPATS  120
TSSLPQVAAA LQKPAKAIAP EVTEKKTGSA PAPEKPQTAE GPVNPPRRPI EARLSTPIAG  180
KSTSQGSPRK EGQTPGLQNG AGIGRADVQL ATSTAVLGSN NRLRVRQPSG DERPQNGMEP  240
DEWWEESSPG FDVLVDAGPE RSHYSEDPDL QGNYEGLEAG RPGPAVQRRG RGLHGADEID  300
QYDYEYQGVF EPAAYDATGL YNHGGYESYE QQGYEHAPAY EQRGHPRSGV YVGRGIEEMY  360
GRERDRMISS RDGESGLGTN HRASRELKRP RGDGPPYHIL ENRSRQRTES GHGVIDEVWS  420
HRRMEEDPQK LHELHLRQQL FVQQQGINKS SNSTSRRTTE RSAGESAGVA RHASSLNTKG  480
ELVVRSLPNG RESAGEGKGS GAVGDVDPAY LRRDAGRSAL RRDNGRPRPA SKVEAMTEAE  540
ILPAGVNSTA VRGSEGRKEQ PSNFAGPKTL AQILAEKRKG GARDDSSKAK EMSGDLRKVD  600
GPIDSYSQNQ SNVVVSQHQD VPSDFNKLAL QPGAHEGKMG AQVTKTQVQT AATSISGHPP  660
GDTVSEDKKR ISAKSLQGRP EAPNFAGPKS LSAILQAKRK GGSETVGNPD IATLDQNHRQ  720
RLAEGVTSPV SNPTKAAVMD AHIPGVTTRA EDTGLASEHP DVEDQPISYK ERRLESGSPM  780
MQDDELVDSA DTVRNDSIVE ELDSVRAAGN EFFNAEKASS EADTRDRDVV FEEDDDEDFG  840
LDDEDEDFAK KLGGFFS*