PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0137s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 319aa MW: 35577.9 Da PI: 8.312 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.7 | 1.1e-16 | 30 | 113 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt +e+ +Li+a++ +++r +g+ ++ +W++v +++++ g++rs++qC++kw+nl ++ykk+++ e++ +e s + Sphfalx0137s0052.1.p 30 WTLHETVTLITAKKLDDQRRLKGSekeksrPAELRWKWVENYCWKNGCQRSQNQCNDKWDNLLRDYKKVRDYESRYPPEPISYW 113 **************77777776533334448899***************************************99766666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.073 | 22 | 92 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.8E-12 | 29 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAEANPNQQQ LALVEVQVKP EDREYRKGNW TLHETVTLIT AKKLDDQRRL KGSEKEKSRP 60 AELRWKWVEN YCWKNGCQRS QNQCNDKWDN LLRDYKKVRD YESRYPPEPI SYWQMEKHER 120 KEKGLPSNLL QQVYQTLHDV IDRRFPTPKL PQQLPGPSTD LNPSGSGQQQ QQLPHPLLRP 180 SSPIQQPSAQ KQPAAPTDTA TAHSLSGDDS SEEEETAAAG AKRRKTTMSG GGGGGAEAIA 240 PAMFKSTVEI TQTLLACEDK KDRRHRDLLG VEERKLHIEE AKTEISRAGV AGLITAVNNL 300 ASAILTLAAD KTAGGDTL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002960379.1 | 4e-98 | trihelix transcription factor ASR3 | ||||
Refseq | XP_002967337.1 | 4e-98 | trihelix transcription factor ASR3 | ||||
TrEMBL | D8QR48 | 1e-96 | D8QR48_SELML; Uncharacterized protein | ||||
STRING | EFJ31936 | 2e-97 | (Selaginella moellendorffii) | ||||
STRING | EFJ37918 | 2e-97 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 4e-52 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0137s0052.1.p |