PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0136s0032.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 334aa    MW: 36785.1 Da    PI: 6.6907
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0136s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.5e-43101101101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           aCaaCk++rrkCa+dC+l+pyfpa+qpk+fanvhklFG+sn l++lk++++++red+++s++yeA+ r +dPv+G++gvi  lq+q+++
  Sphfalx0136s0032.1.p  10 ACAACKYQRRKCAPDCPLSPYFPADQPKRFANVHKLFGVSNTLRILKHVDPSQREDTVKSIAYEADTREKDPVHGCLGVIIMLQNQVSK 98 
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkeel 101
                           lk ela+++e+l
  Sphfalx0136s0032.1.p  99 LKDELAMAREQL 110
                           *******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.4649110IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4110107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGPGGTNTA CAACKYQRRK CAPDCPLSPY FPADQPKRFA NVHKLFGVSN TLRILKHVDP  60
SQREDTVKSI AYEADTREKD PVHGCLGVII MLQNQVSKLK DELAMAREQL YMLQQLQCFE  120
SQQAAQSQHP MVASFTGVSS SSAYAPGPVY GSNAVLMHQS QNNYCGLDNN HLSGSMISLD  180
DHYSLRHESF DPLKLQSATY DHRYGITEAD SSALHQVLAM GHMKAAHDRG EAELPRIGSY  240
FGTTAHMSSD QFDVDIPVSH PPQMNNETAT LEQADQQSNM HTRALSNGLV NLAVTSSDNS  300
DIRRANYNLG IDHIGRDHEL RRAGVYLTLT NQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3761107111LOB family transfactor Ramosa2.1
5ly0_B5e-3761107111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024357789.11e-82LOB domain-containing protein 22-like isoform X1
RefseqXP_024357790.11e-82LOB domain-containing protein 22-like isoform X1
TrEMBLA0A2K1IUQ93e-81A0A2K1IUQ9_PHYPA; Uncharacterized protein
STRINGPP1S9_450V6.16e-82(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.17e-39LOB domain-containing protein 25