PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0135s0041.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 667aa MW: 72514 Da PI: 6.2352

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0135s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.5e-11	398	444	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h erEr+RRd++ s+f++L +llP+ +K + ++i+ ++Y+k+L Sphfalx0135s0041.1.p 398 TEHIERERQRRDNMSSRFSTLETLLPPG-----PKRDRSTIVDDSIQYVKNL 444 5799********************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.643	395	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-13	398	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	398	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	399	462	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.02E-10	400	449	No hit	No description
SMART	SM00353	9.5E-9	401	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MRYDWDYEMS YGYRGVAGGR AGGGRGEGEC DQSTSGEPAA GRGAGADAHG SQLLMNRAFH 60 ERLEQDLRAQ VDSGAAVSMQ QHQHKQMIYD EYMSGVSFPL QAREEDSLPA GFRHHPGIVS 120 SNGEDYDIYQ QPLDNGVDDR EAAPLVIMGD IGASSHFVHD GEADIMDHRM NIQRLFQESS 180 LQPRKLHDES SSASIMFTAS DQAVVTRGYT TAGMTTDCTR FVPSDYMLDA ASATASSLAV 240 THSDLLLSPS PAAVMVQTVP CLNRPKHSSS TSVGASRSRS GSLDRHDGGA SVLAGTNIAF 300 HENSQATVHR RDQSSWGLDQ CAEGRAGDET MQGSSELLRG VKRVRITHED VETTETTFLQ 360 QQADVQPQQQ LKKSKLQQQN SERMTSQGSR SKRSVDQTEH IERERQRRDN MSSRFSTLET 420 LLPPGPKRDR STIVDDSIQY VKNLHHQIAI LRQKRSQLKL MSVAAAPASS SPTSCVAGSA 480 ANRIDNACTT TAAISAPKSS ILGSVSNSTD TKMPDQNGSL EGGSQEMIID PDQQQLRRLR 540 PAAMGNMTVL SNVGSAPPDS SCKLDVFMDL PEQVVIEMVY QLPRPHIQSQ ILQAVESLGL 600 DVCHCSLNKL VRLRVVYVIV AKPRVVTNCA VSYDEIVEAL KCALVGVPSD NVTTPMINIA 660 KLETSR*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MRYDWDYEMS YGYRGVAGGR AGGGRGEGEC DQSTSGEPAA GRGAGADAHG SQLLMNRAFH  60
ERLEQDLRAQ VDSGAAVSMQ QHQHKQMIYD EYMSGVSFPL QAREEDSLPA GFRHHPGIVS  120
SNGEDYDIYQ QPLDNGVDDR EAAPLVIMGD IGASSHFVHD GEADIMDHRM NIQRLFQESS  180
LQPRKLHDES SSASIMFTAS DQAVVTRGYT TAGMTTDCTR FVPSDYMLDA ASATASSLAV  240
THSDLLLSPS PAAVMVQTVP CLNRPKHSSS TSVGASRSRS GSLDRHDGGA SVLAGTNIAF  300
HENSQATVHR RDQSSWGLDQ CAEGRAGDET MQGSSELLRG VKRVRITHED VETTETTFLQ  360
QQADVQPQQQ LKKSKLQQQN SERMTSQGSR SKRSVDQTEH IERERQRRDN MSSRFSTLET  420
LLPPGPKRDR STIVDDSIQY VKNLHHQIAI LRQKRSQLKL MSVAAAPASS SPTSCVAGSA  480
ANRIDNACTT TAAISAPKSS ILGSVSNSTD TKMPDQNGSL EGGSQEMIID PDQQQLRRLR  540
PAAMGNMTVL SNVGSAPPDS SCKLDVFMDL PEQVVIEMVY QLPRPHIQSQ ILQAVESLGL  600
DVCHCSLNKL VRLRVVYVIV AKPRVVTNCA VSYDEIVEAL KCALVGVPSD NVTTPMINIA  660
KLETSR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	23	GGRAGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	9e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0135s0041.1.p