PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0133s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 90aa MW: 10319.9 Da PI: 5.9264 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.8 | 1.8e-20 | 22 | 72 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + qvtfsk r +lKKA+EL vLCdaeva iif + gkl+ ++s Sphfalx0133s0037.1.p 22 KRIENPTSMQVTFSKCRGALLKKAHELVVLCDAEVAFIIFFNIGKLFKFAS 72 79**********************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.418 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.3E-29 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-23 | 14 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.5E-19 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 90 aa Download sequence Send to blast |
MDPLRQEEEE EEDMGRGKIE IKRIENPTSM QVTFSKCRGA LLKKAHELVV LCDAEVAFII 60 FFNIGKLFKF ASSGSFNIKM RKKEEQDYT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-16 | 14 | 73 | 1 | 60 | MEF2C |
5f28_B | 5e-16 | 14 | 73 | 1 | 60 | MEF2C |
5f28_C | 5e-16 | 14 | 73 | 1 | 60 | MEF2C |
5f28_D | 5e-16 | 14 | 73 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373424.1 | 1e-26 | MADS-box protein GGM13-like isoform X1 | ||||
Swissprot | Q9XGJ4 | 2e-24 | GGM13_GNEGN; MADS-box protein GGM13 | ||||
TrEMBL | A0T1Z3 | 1e-27 | A0T1Z3_PHYPA; MADS-domain transcription factor (Fragment) | ||||
STRING | PP1S171_71V6.1 | 1e-28 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.3 | 1e-24 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0133s0037.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|