PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0133s0036.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 433aa MW: 46363.3 Da PI: 8.0389

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0133s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.2e-39	187	288	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++apyf a+q +++fa+vhk+FGasnv kll+++p +r da+ ++ yeA+ar++dPvyG+v++i++lqqq++ Sphfalx0133s0036.1.p 187 PCGACKFLRRKCVRGCIFAPYFGADQgAARFAAVHKIFGASNVAKLLQHIPMPRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVA 275 7*********************9989********************************************************* PP DUF260 89 qlkaelallkeel 101 +l+aela+++++l Sphfalx0133s0036.1.p 276 SLQAELAMVQAQL 288 *******9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.339	186	288	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-38	187	285	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MESDSQFHLC VETVVDQAVC WGLASVQASS QPRDNSRLGG KGSADSENQG SQRDRDHQLE 60 TWQRQSGQPV DYATSWPSFP DRSQEQDWRT AGVVDYRQLD QPNPRSGEHR STKEGDSTAT 120 ESSRGRIESS DQQRDKGARR GSAVRGKATG VIGSTSGAGV RSSRDQVAAG VSGLSASTSA 180 SMSSGAPCGA CKFLRRKCVR GCIFAPYFGA DQGAARFAAV HKIFGASNVA KLLQHIPMPR 240 RCDAVLTISY EAQARLSDPV YGCVATIFAL QQQVASLQAE LAMVQAQLAD RHAAAAAHLQ 300 QQQHPQMGAG LSSSAAASQA AYMQQFEQQS DQLNIPPTSA LSMSLASGSG SPAAAHNYLR 360 IKEEGRRPYH AGMQHDFRYG MPSNVPLEPA LSHQALVQQA ESLEKPRTGT LSDQPDDGEL 420 QALAHSLLRR SK*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MESDSQFHLC VETVVDQAVC WGLASVQASS QPRDNSRLGG KGSADSENQG SQRDRDHQLE  60
TWQRQSGQPV DYATSWPSFP DRSQEQDWRT AGVVDYRQLD QPNPRSGEHR STKEGDSTAT  120
ESSRGRIESS DQQRDKGARR GSAVRGKATG VIGSTSGAGV RSSRDQVAAG VSGLSASTSA  180
SMSSGAPCGA CKFLRRKCVR GCIFAPYFGA DQGAARFAAV HKIFGASNVA KLLQHIPMPR  240
RCDAVLTISY EAQARLSDPV YGCVATIFAL QQQVASLQAE LAMVQAQLAD RHAAAAAHLQ  300
QQQHPQMGAG LSSSAAASQA AYMQQFEQQS DQLNIPPTSA LSMSLASGSG SPAAAHNYLR  360
IKEEGRRPYH AGMQHDFRYG MPSNVPLEPA LSHQALVQQA ESLEKPRTGT LSDQPDDGEL  420
QALAHSLLRR SK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	184	288	8	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	184	288	8	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024390481.1	3e-99	uncharacterized protein LOC112289471
TrEMBL	A0A2K1JQK5	1e-100	A0A2K1JQK5_PHYPA; Uncharacterized protein (Fragment)
STRING	PP1S261_2V6.1	1e-100	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	4e-57	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Sphfalx0133s0036.1.p