PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0133s0022.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family E2F/DP
Protein Properties Length: 665aa    MW: 71190 Da    PI: 8.4085
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0133s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.21.2e-22114179171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           rk+ksL+ll+ +fl+l+ ++e   ++l+e+a++L    v  +rRRiYDi+NVLe++n++ +k+kn+++w+g
  Sphfalx0133s0022.1.p 114 RKDKSLGLLCDNFLNLYGTEEGVCISLDEAASRL---GV--ERRRIYDIVNVLESVNILIRKAKNRYTWHG 179
                           79****************9999************...**..****************************98 PP

2E2F_TDP68.76.9e-22261341171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                           r+eksL+ll+qkf++l+  s++++v+l+++a+ L+       + k+k+RR+YDi+N+L++l+liek     ++k+++rw g
  Sphfalx0133s0022.1.p 261 RREKSLGLLSQKFVQLFLISQTETVSLEDAARLLLGGckdpsKLKTKVRRLYDIANILSSLQLIEKthmteSRKPAFRWLG 341
                           689*******************************988999**9***********************9999999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-26110180IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.85E-15113178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-28114179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-20115179IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-23257342IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-30261341IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.56E-11263342IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-19263341IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MHMALSPHKD NLRSKLSQDR STRDKMQSVA VGINSSSKIK ARSSELLETH SIGNGSEGKA  60
HRSFQRKRGA AADAKATNCE NIDDSGRSLS PSLDAGAPMQ SEADTRGHAS SYNRKDKSLG  120
LLCDNFLNLY GTEEGVCISL DEAASRLGVE RRRIYDIVNV LESVNILIRK AKNRYTWHGS  180
TKLAQALQTM KEEALCHYGL AESQGAAGVH NNTGVSDSPL GCGSSDDEDE GRKVVISANL  240
DGGISLQPQQ GGGPKEKAEC RREKSLGLLS QKFVQLFLIS QTETVSLEDA ARLLLGGCKD  300
PSKLKTKVRR LYDIANILSS LQLIEKTHMT ESRKPAFRWL GTKDDLVGPA SRKRMAGMCS  360
TAQHPIYSSL PANKTGRGVK RFPGTENMVK GDQTVLKRAT LKPLQPRCPN TMAPYPKELI  420
NKPVPLYPRT PQGDTPVPDA TKVVAPMAPG PQIGVAVGTT GGWREWNEGA PIASLTNSGW  480
SSPQWCEHIT VAHKVCPQAE DTPACTAATC TSCAPVTSCC PAVGAPPIIP MPLRGCFSCP  540
AKTSPENSCY PMVPTPTGAF LNPFLPPFAL QHLATGGIPF MPGVVAGQVL GLDHTKPQES  600
SLPHTDAGVA AAASALQYQN ETLGHMFAHY VDAWKSFYLQ ATSMSSPVCF EAPPAPCDPL  660
QSTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-421143334228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358850.10.0transcription factor E2F7-like isoform X1
TrEMBLA0A2K1IRU40.0A0A2K1IRU4_PHYPA; Uncharacterized protein
STRINGPP1S132_65V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.13e-62DP-E2F-like 1