PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0133s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 665aa MW: 71190 Da PI: 8.4085 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 71.2 | 1.2e-22 | 114 | 179 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+ +fl+l+ ++e ++l+e+a++L v +rRRiYDi+NVLe++n++ +k+kn+++w+g Sphfalx0133s0022.1.p 114 RKDKSLGLLCDNFLNLYGTEEGVCISLDEAASRL---GV--ERRRIYDIVNVLESVNILIRKAKNRYTWHG 179 79****************9999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 68.7 | 6.9e-22 | 261 | 341 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+ll+qkf++l+ s++++v+l+++a+ L+ + k+k+RR+YDi+N+L++l+liek ++k+++rw g Sphfalx0133s0022.1.p 261 RREKSLGLLSQKFVQLFLISQTETVSLEDAARLLLGGckdpsKLKTKVRRLYDIANILSSLQLIEKthmteSRKPAFRWLG 341 689*******************************988999**9***********************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-26 | 110 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.85E-15 | 113 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.7E-28 | 114 | 179 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.8E-20 | 115 | 179 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.5E-23 | 257 | 342 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.1E-30 | 261 | 341 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.56E-11 | 263 | 342 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-19 | 263 | 341 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MHMALSPHKD NLRSKLSQDR STRDKMQSVA VGINSSSKIK ARSSELLETH SIGNGSEGKA 60 HRSFQRKRGA AADAKATNCE NIDDSGRSLS PSLDAGAPMQ SEADTRGHAS SYNRKDKSLG 120 LLCDNFLNLY GTEEGVCISL DEAASRLGVE RRRIYDIVNV LESVNILIRK AKNRYTWHGS 180 TKLAQALQTM KEEALCHYGL AESQGAAGVH NNTGVSDSPL GCGSSDDEDE GRKVVISANL 240 DGGISLQPQQ GGGPKEKAEC RREKSLGLLS QKFVQLFLIS QTETVSLEDA ARLLLGGCKD 300 PSKLKTKVRR LYDIANILSS LQLIEKTHMT ESRKPAFRWL GTKDDLVGPA SRKRMAGMCS 360 TAQHPIYSSL PANKTGRGVK RFPGTENMVK GDQTVLKRAT LKPLQPRCPN TMAPYPKELI 420 NKPVPLYPRT PQGDTPVPDA TKVVAPMAPG PQIGVAVGTT GGWREWNEGA PIASLTNSGW 480 SSPQWCEHIT VAHKVCPQAE DTPACTAATC TSCAPVTSCC PAVGAPPIIP MPLRGCFSCP 540 AKTSPENSCY PMVPTPTGAF LNPFLPPFAL QHLATGGIPF MPGVVAGQVL GLDHTKPQES 600 SLPHTDAGVA AAASALQYQN ETLGHMFAHY VDAWKSFYLQ ATSMSSPVCF EAPPAPCDPL 660 QSTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 3e-42 | 114 | 333 | 4 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358850.1 | 0.0 | transcription factor E2F7-like isoform X1 | ||||
TrEMBL | A0A2K1IRU4 | 0.0 | A0A2K1IRU4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S132_65V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 3e-62 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0133s0022.1.p |