PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0132s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 624aa MW: 66519.8 Da PI: 5.2378 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86 | 3.7e-27 | 286 | 340 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G ekA P++ilelm+v++Lt+++++SHLQkYR++ Sphfalx0132s0007.1.p 286 KAKVDWTPELHRRFVHAVEQL-GVEKAFPSRILELMGVQCLTRHNIASHLQKYRSH 340 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.533 | 283 | 342 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-27 | 284 | 343 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-17 | 284 | 342 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 286 | 340 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-7 | 289 | 338 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MAGALEVLRH RRWKMDTEDQ EAMKKKISFE GEQQQNAPSS LLSQSLFSVL KTAENCAEEE 60 EVAAPQLLQL NTNPNAAAAE ETASHVLLLH QQQHHTPHVQ DVQIVECCLD VSRDCLDFVQ 120 TEEDFECLNS LKKVEDEEGV GVLPGRGDGD GGVVVDGAEK LLSHCMEFCK SEISCLDSFD 180 AQAGCVDGAA EVVAPSESLD SGVAGEEEQL QEDVAKSATT AAAAAGDAAA SSGSEISGEC 240 SSGGDNKEER SSSSRKQEVG TAGSSKNAAA AAIGGAHGGG GSGKKKAKVD WTPELHRRFV 300 HAVEQLGVEK AFPSRILELM GVQCLTRHNI ASHLQKYRSH RRHLAAREAE AATSWINHHR 360 RPYSSTHSAA AAAAASCWNR SSRRYLAPVH SSCCNSHSPP PIQPRPVQRP HTLLHAHNHQ 420 MQQQVLLTAA PLKVWGYPTV DHSSVHLWHQ PAPLNPPPSF WQAPDGSYWQ HPASSYDAAS 480 QSAQAPAAAC YPHPMRVPLA TTPSNTAALA DVLLQGFSSD QDSFFAADEA LPDSMYLLCN 540 SYESDDFLGT VSSSAGASCC SSTISGSESQ YLSQEILDAA IAISEALANP WTPPPLGLKP 600 PSMEGVIAEL QRQGINTVPP STC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-16 | 282 | 338 | 1 | 57 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379514.1 | 1e-122 | transcription activator GLK1-like | ||||
TrEMBL | Q5IFL7 | 1e-121 | Q5IFL7_PHYPA; Golden 2-like protein 1 | ||||
STRING | PP1S311_30V6.1 | 1e-122 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 4e-23 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0132s0007.1.p |