PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0130s0063.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-X1
Protein Properties Length: 1293aa    MW: 139078 Da    PI: 7.9139
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0130s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1201.5e-06464481118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG+H C++lCHeG C pC
  Sphfalx0130s0063.1.p 464 CGRHVCNQLCHEGACNPC 481
                           ****************** PP
2zf-NF-X120.41.1e-06811826116
              zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                           CG H C ++CH GpC+
  Sphfalx0130s0063.1.p 811 CGLHACARTCHVGPCD 826
                           ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.609297361IPR019787Zinc finger, PHD-finger
SuperFamilySSF578501.94E-6299364No hitNo description
PROSITE patternPS013590300358IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.993300359IPR001841Zinc finger, RING-type
CDDcd060082.70E-8392446No hitNo description
SMARTSM004380.28408426IPR000967Zinc finger, NF-X1-type
PfamPF014221.1409424IPR000967Zinc finger, NF-X1-type
CDDcd060081.06E-12454502No hitNo description
PfamPF014226.7E-5464481IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0012464483IPR000967Zinc finger, NF-X1-type
CDDcd060083.41E-9518561No hitNo description
PfamPF014220.13528545IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017528547IPR000967Zinc finger, NF-X1-type
CDDcd060087.56E-14582629No hitNo description
PfamPF014220.0022586609IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019592611IPR000967Zinc finger, NF-X1-type
PfamPF014220.86661673IPR000967Zinc finger, NF-X1-type
SMARTSM0043833661693IPR000967Zinc finger, NF-X1-type
CDDcd060083.45E-8691743No hitNo description
PfamPF014221.4695718IPR000967Zinc finger, NF-X1-type
SMARTSM004380.55701720IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-4748796No hitNo description
PfamPF0142212758775IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0017758776IPR000967Zinc finger, NF-X1-type
PfamPF014228.8E-5811826IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002811841IPR000967Zinc finger, NF-X1-type
CDDcd060086.20E-5839888No hitNo description
SMARTSM004380.032850871IPR000967Zinc finger, NF-X1-type
PfamPF014221.9851870IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1293 aa     Download sequence    Send to blast
MATYQVGEPT PISSDRDGRN FRRVENDRFF TGGADVLYSP RLAGEAALHS SMTGRGSSSA  60
PSGDVRVIDQ QAMGSRPAQS RNQRAGARSS RSEDPEQPRN EPGNSSHRGL GTRRDWRGGY  120
QGRGGHRPDG LAAHEHSSQV ENFGRQGGFQ GEVDGHNGQE NVVRSGGNQH NSEPQSSQST  180
SGANFRVETP DRSETHQQDV HRDNGRRGGR GRSGGRARGG IDSGNWRRIN PLSNSEHAGN  240
PGRTPRVNLR GEAGQYKALS TDLNREVKQQ QFQKASGEKV NVPQLVQELE VKLTKGKVEC  300
MICYDTVGRN SPIWSCASCF SIFHLPCIRK WARSPTSSDL SAPASRNAFE GNWRCPGCQA  360
VQLISADELH YYCFCGQIEE PSLDYYITPH SCGGPCRKLL DRGKNGRCKH HCTMQCHPGP  420
CPPCMALAPP QSCPCGKNTF ILKCSEQDKG ASTCLQPCGR ALDCGRHVCN QLCHEGACNP  480
CEVVVSAKCF CGRQQEGMLC GQLDPPGEMD WSMGVFSCEL DCGRVLPCGQ HHCLEKCHPG  540
SCGECMLSPS VICTCPCGKK TVAELLGPGV SRRNCTDPVP TCLEACGKLL PCQKHLCQKL  600
CHTGPCPPCE IPVEQKCRCG ASARTVACYI AVHKGNNEDK LEDSDKVLFL CDRKCGKKKN  660
CGRHRCSERC CSGANEEVQV EQSDSENSHL CTLPCGKRLR CKQHDCHALC HAGHCPPCLE  720
TTFTELSCAC GQTAIPPPVP CGTPLPSCQY PCSVPQVCGH EVTHLCHFGD CPPCTVPVAK  780
ECVGNHVVLR GVPCGSRDIK CNKLCGKTRQ CGLHACARTC HVGPCDVEAE TVGQKQISCN  840
QPCGAPRRDC PHTCSAICHP ASACPEIPCK VTVSINCICG RLTAEVPCDS GGPGNHGLSE  900
SATMALSRLA VPLQPLEGRQ RERVPLGRRK LACDEECAKL EKKRLLADAF SATAPGEVGL  960
GLEGGIVGSE MLMEIARRDP QWVASIEDRF KYLLLGPKNG PGASLRLHVF CALAIERREA  1020
IHLMGERWGL TVTGFGREPR RFVVAHVTTK SKLPARSLFS KGPVLPSAGQ ARQPPFDPLL  1080
DMDPGLVVAL LDLPRDADVS TLVLRFGGEC ELVWLNDRNA LAIFSDAARA ATALRRVDHS  1140
SVYRGAAGMP PPRGSSVLRG GLHATSMAGA KPPLLSKGMQ DSNWVEDAWS DEQRSLKQEM  1200
GAWQRNALPI TTKNPWATLG QVNHQSEGSS SSSKLPLPAS SSEAPSIKNR ASGAGVVGSK  1260
QAAIGSSATI LQSQTLDGSD DDWEKALEEG GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365063.10.0NF-X1-type zinc finger protein NFXL1-like
TrEMBLA0A2K1IDC00.0A0A2K1IDC0_PHYPA; Uncharacterized protein
STRINGPP1S215_60V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1