PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0126s0017.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRF
Protein Properties Length: 631aa    MW: 64671.3 Da    PI: 8.937
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0126s0017.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23168212145
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                           d++pgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsrk+ + 
  Sphfalx0126s0017.2.p 168 DPDPGRCRRTDGKKWRCGRDVVPDQKYCERHMHRGRHRSRKHADG 212
                           79***************************************9775 PP
2QLQ52.71.3e-18101136237
                   QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           +FT  Q+++L++Q+l++Ky++a++ vPpeLl +i+k
  Sphfalx0126s0017.2.p 101 PFTSGQWAELEHQALIFKYMMAGVNVPPELLNPIRK 136
                           9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-9100136IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-13101135IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.373101136IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.294168212IPR014977WRC domain
PfamPF088791.9E-19169209IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MGSEHGGGGG GVAGLCDTRL LIRGESGGPL SSSSYHHHHQ AAGTTAAYHH YNKPAGGGAS  60
TLCGGGGAVE QQSMNEMQAA QQFLQHNNSS SMSCGVGGRA PFTSGQWAEL EHQALIFKYM  120
MAGVNVPPEL LNPIRKSMAA LINGMTASHH AANLRWANIY RGVPSNTDPD PGRCRRTDGK  180
KWRCGRDVVP DQKYCERHMH RGRHRSRKHA DGSQAAAAAT GGGGAAASTL LSPRSAAGTG  240
ATSASSSGSG AVSSVTTTNV GPIRGSGGGG STSTTTGGGG GGGAAAATAV STSGGGSSSC  300
SPFSLTSCLQ QRSSSNLAVK TFSSSHSGSP AHHGGSGGGS SPAASSQFGQ LPSLSSSPSQ  360
GASTLTNKDY RYLGALIKSE QGIQGSSSEQ LLSTSDTSGS TRSGGGPAGG QDSQSSMLSN  420
LSRLPSMNQS WHSMSSKVPP PPTAAAPPEP KLQNNNNNNS SGILHYHSPQ MRGLLGQDFG  480
LLPETSQVTD VTGMSASSQH HHHHHHHQQQ QQHQAAAAAA AAYMSNAYGG GAESVGRESE  540
GQPLRHFFDD WPRSSRDQSH TMTWGSAAAG VDESTERSNS DNHHHHHHHH HLIHNPNNNT  600
QLSISIPITT PSSAMTLSAQ RPGSPPAGCR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-38growth-regulating factor 5