PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0126s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRF | ||||||||
Protein Properties | Length: 640aa MW: 65647.4 Da PI: 8.8952 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.1 | 1.5e-23 | 168 | 212 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d++pgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsrk+ + Sphfalx0126s0017.1.p 168 DPDPGRCRRTDGKKWRCGRDVVPDQKYCERHMHRGRHRSRKHADG 212 79***************************************9775 PP | |||||||
2 | QLQ | 52.7 | 1.3e-18 | 101 | 136 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT Q+++L++Q+l++Ky++a++ vPpeLl +i+k Sphfalx0126s0017.1.p 101 PFTSGQWAELEHQALIFKYMMAGVNVPPELLNPIRK 136 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-9 | 100 | 136 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-13 | 101 | 135 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.373 | 101 | 136 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.294 | 168 | 212 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.9E-19 | 169 | 209 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MGSEHGGGGG GVAGLCDTRL LIRGESGGPL SSSSYHHHHQ AAGTTAAYHH YNKPAGGGAS 60 TLCGGGGAVE QQSMNEMQAA QQFLQHNNSS SMSCGVGGRA PFTSGQWAEL EHQALIFKYM 120 MAGVNVPPEL LNPIRKSMAA LINGMTASHH AANLRWANIY RGVPSNTDPD PGRCRRTDGK 180 KWRCGRDVVP DQKYCERHMH RGRHRSRKHA DGSQAAAAAT GGGGAAASTL LSPRSAAGTG 240 ATSASSSGSG AVSSVTTTNV GPIRGSGGGG STSTTTGGGG GGGAAAATAV STSGGGSSSC 300 SPFSLTSCLQ QRSSSNLAVK TFSSSHSGSP AHHGGSGGGS SPAASSQFGQ LPSLSSSPSQ 360 GASTLTNKDY RYLGALIKSE QGIQGSSSEQ LLSTSDTSGS TRSGGGPAGG QDSQSSMLSN 420 LSRLPSMNQS WHSMSSKVPP PPTAAAPPEP KLQNNNNNNS SGILHYHSPQ MRGLLGQDFG 480 LLPETSQVTD VTGMSASSQH HHHHHHHQQQ QQHQAAAAAA AAYMSNAYGG GAESVGRESE 540 GQPLRHFFDD WPRSSRDQSH TMTWGSAAAG VDESTERSNS DNHHHHHHHH HLIHNPNNNT 600 QLSISIPITT PSSAMTLSAQ RPGSPPAGTI LFNNLSNFA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-38 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0126s0017.1.p |