PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0124s0047.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 409aa MW: 44117.4 Da PI: 8.1795

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0124s0047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.3	1.3e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C+++C+l+p++ ++q +++ +++k+FG++ ++ +++a+p+ +r+++++sl+yeA+ r+ +Pv Gavg++ +++ Sphfalx0124s0047.1.p 2 SCNGCRVLRKGCSESCILRPCLqwiddSDAQGHATVFLAKFFGRAGLMGFINAVPDGQRPALFQSLLYEACGRTVNPVFGAVGLLASGN 90 6*******************9988666788***************************************************** PP DUF260 85 qqleqlkaelall 97 +ql+q+++e++l Sphfalx0124s0047.1.p 91 WQLCQVAVETVLK 103 *****998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.966	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDDSD AQGHATVFLA KFFGRAGLMG FINAVPDGQR 60 PALFQSLLYE ACGRTVNPVF GAVGLLASGN WQLCQVAVET VLKGGSLRPP SPSKFSSSFM 120 PPRALITRLD KPVDANEVLN SRIQQVVPSH PSPELFSSEL YKPRSLGMGF LDKNLQQAWG 180 HEEEQKNVLS GMRGGLNGST RSAQELQQHR MMQGSALHRS TWPGAVSVSF YPSKHETSFD 240 VKDEQALGMS NRQIDVKGVG IERHESLGLC RTQILAPVAR RVKPRLCTAD SAMANPSSKS 300 DLKGILAAGL GSNRSEYQPE LELDLTLKVQ DTKMCSPAAG LQVSSPSCES VISEGSVTSH 360 SSQVVPSQTC STPWALEQLE KEPPPPPAGF PAVAHPPPHH HKLLPLLL*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MSCNGCRVLR KGCSESCILR PCLQWIDDSD AQGHATVFLA KFFGRAGLMG FINAVPDGQR  60
PALFQSLLYE ACGRTVNPVF GAVGLLASGN WQLCQVAVET VLKGGSLRPP SPSKFSSSFM  120
PPRALITRLD KPVDANEVLN SRIQQVVPSH PSPELFSSEL YKPRSLGMGF LDKNLQQAWG  180
HEEEQKNVLS GMRGGLNGST RSAQELQQHR MMQGSALHRS TWPGAVSVSF YPSKHETSFD  240
VKDEQALGMS NRQIDVKGVG IERHESLGLC RTQILAPVAR RVKPRLCTAD SAMANPSSKS  300
DLKGILAAGL GSNRSEYQPE LELDLTLKVQ DTKMCSPAAG LQVSSPSCES VISEGSVTSH  360
SSQVVPSQTC STPWALEQLE KEPPPPPAGF PAVAHPPPHH HKLLPLLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-64	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Sphfalx0124s0047.1.p