PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0124s0031.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YA
Protein Properties Length: 290aa    MW: 31112.4 Da    PI: 7.8405
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0124s0031.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.62.1e-33122178158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF
  Sphfalx0124s0031.2.p 122 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHQHALRRARGCGGRF 178
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-38120181IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.587121181IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-28123178IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-24124146IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860126146IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-24155178IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQAPLSASPD APDEAAARPP RMQAITPQTG FEGGSVDEQQ QQQQQQQQQQ QVLPTGIPAP  60
GEYLLPHTQL ELGHSMARSA YPYADPYFGG IALAYGTQAM IHPHMLGVQQ ARMPLPSEMM  120
EEEPVYVNAK QYHGILRRRQ SRAKAESENK LIKSRKPYLH ESRHQHALRR ARGCGGRFLN  180
KKVKEGDQQG NSDNNRSCEG QSSQGRNASD PQASNSGQGM MGSQGEAAGY HPAMLVPSGN  240
NAYQNHHPPG PLHSSAFHPL PGASDAGAGG NSGNNIVSSG PQETVVSTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21122185265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388759.11e-123nuclear transcription factor Y subunit A-9-like isoform X2
SwissprotQ945M91e-39NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2K1JVK41e-120A0A2K1JVK4_PHYPA; Uncharacterized protein
STRINGPP1S31_299V6.11e-120(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-35nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]