PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0124s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1211aa MW: 135413 Da PI: 6.3551 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 167.4 | 2.3e-52 | 24 | 140 | 3 | 117 |
CG-1 3 kekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 + +krwlk+ e+++i+++++ h ++l ++ rp sgsl+L++r ++ryfrkDG++w+kk+d +tvrE+he+LK+g+v+vl+cyYah+e Sphfalx0124s0017.1.p 24 EAQKRWLKPVEVCEIINQYQTHGFKLnpIAPVRPASGSLFLFDRNVLRYFRKDGHNWRKKRDLRTVREAHERLKIGNVDVLHCYYAHGE 112 459******************9998866789********************************************************** PP CG-1 90 enptfqrrcywlLeeelekivlvhylev 117 +np+fqrrcyw+L+ ++e+ivlvhy+ev Sphfalx0124s0017.1.p 113 TNPNFQRRCYWMLDPSMEHIVLVHYREV 140 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.689 | 18 | 146 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.4E-67 | 21 | 141 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.6E-49 | 24 | 139 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.8E-5 | 575 | 670 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 4.2E-15 | 584 | 670 | IPR014756 | Immunoglobulin E-set |
Pfam | PF12796 | 1.0E-6 | 767 | 850 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.58E-17 | 769 | 883 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.2E-18 | 770 | 884 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.03E-14 | 770 | 881 | No hit | No description |
PROSITE profile | PS50297 | 17.873 | 789 | 883 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.1E-5 | 822 | 851 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.14 | 822 | 854 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3500 | 861 | 890 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 310 | 943 | 965 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 5.49E-7 | 981 | 1058 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.075 | 991 | 1008 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.093 | 1006 | 1028 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.297 | 1007 | 1034 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.024 | 1009 | 1027 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.59 | 1029 | 1051 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.828 | 1031 | 1058 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0062 | 1034 | 1050 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1211 aa Download sequence Send to blast |
MASARRPRSH PLKPKTGIQE IITEAQKRWL KPVEVCEIIN QYQTHGFKLN PIAPVRPASG 60 SLFLFDRNVL RYFRKDGHNW RKKRDLRTVR EAHERLKIGN VDVLHCYYAH GETNPNFQRR 120 CYWMLDPSME HIVLVHYREV DELGRIIVSP SHGPSPREER SRSSSMSVGH EHNGGSAGES 180 EEASAFSTAE AFSSVLNKQA AQLDQVSPQH QKPGALEVGP RGNGLDPLSM PKSSETVHPD 240 LAGIESMLNS PSVFAPGASP SSFSLLSPLG SDHFNRQQQQ HEHLVPVQGS SIESMNSAKL 300 GSRFTGVGPQ PSTKDEELDM VGWKELLAST QSNQTIPSND TGVPGGSATA GEPATTENTD 360 DLNWADMLEQ CMTPESHLAM LDSVQSQDDP VVQSANDLSQ TQALSYLKQI LSPTVPPTVQ 420 HQEPLTKDDA LQLYQKRFPM TRMDLQQTDA QLDSQTMELG DSKFEHVQNP GPERSLTEAV 480 GNKNMDKSLT KFDGLNNLKF ESSIEQSGVN DSVLNNFRKL DSFGRWMSTH LSSNNENFLL 540 DPGSPHTPVL EDHGVSEAGN RKSVEMQTET GLHTPVIREQ SYSIIDFSPN FGYSFEETKV 600 LVTGMFLGEY NNRVSDIRWC CMFGEVEVPA EVLGGGALRC KAPAQATGRV SFYITCGDRQ 660 PHSEIREFEY CSALRGYSKP DHFERSHRIE NEMLLKIRLT CMLLEVADAP KSDNEGDLQK 720 QSSHGDCFDI GYSRDEWLDL EHLAMSPGNS QALDFHEQLL QMLLKCHMQK WLLCRGEDEV 780 KGPAVLNREG QGVLHMTAAL GYHWAIAPLV TAGLPINFRD IHGWTALHWA AWYGQEEAIL 840 HLLKAGADPA AVTDPTVTIT TGQTAADLAA SNGYVGISGF LAESSLTSRL SAMTFFEDPE 900 DIKLSHIAGH NAVAKLDQES LKRSVVGDED QLSLEASIDA VQNAAKSKAL IQAAFRQHSF 960 RKREKDALLA SMPSAEYNLT ADELQAWMTA NAAKKIQKAY RGHHGRQQSA ATHIQHKYRG 1020 WKVRREFLRF RQQVVMLQAH VRGHIVRKRF TKLLWSVSVV EKAVLRWLRR RHGLRGFRNE 1080 FILPDRDDDE FLREGRKKTE VALDKDVTRV VGMVPSRKGR AQYRRLREKS LQSHQTGSSE 1140 LDVCQPTQSS EPEVQQQMQS SQARSPEDIL EIDDPFTSFT ASEYQGQSFQ LPPLHDFLDS 1200 TDDTLMTFTD * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 918 | 923 | ESLKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.2 | 1e-105 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0124s0017.1.p |