PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0121s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25889.7 Da PI: 8.3983 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.8 | 1.6e-42 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++gvi +lqqq++ Sphfalx0121s0036.1.p 52 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMDVPENQRADAVSSLVYEANARIRDPVYGCMGVIYALQQQIRL 140 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ael+++++ Sphfalx0121s0036.1.p 141 LQAELSAVRKD 151 ******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.096 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-42 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLQKSRDREP ERTGILLKKL HCRKKAEKKK KIGFLIGFCF LLMALATNAC TPCAACKLLR 60 RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMDV PENQRADAVS SLVYEANARI 120 RDPVYGCMGV IYALQQQIRL LQAELSAVRK DILRYKTTHQ QETTILPVSA SSQHSPAATA 180 AELDNPTTSS PAAAELLFPT ADSTPHASVD QSDPEDVHTP ESKEHTYWDS TLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-45 | 48 | 155 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-45 | 48 | 155 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 30 | KKLHCRKKAEKKKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022006499.1 | 8e-66 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 3e-58 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A251SMK7 | 2e-64 | A0A251SMK7_HELAN; Putative LOB domain-containing protein 15 | ||||
STRING | XP_009369256.1 | 1e-64 | (Pyrus x bretschneideri) | ||||
STRING | cassava4.1_029925m | 2e-64 | (Manihot esculenta) | ||||
STRING | XP_002520837.1 | 1e-64 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-60 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0121s0036.1.p |
Publications ? help Back to Top | |||
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