PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0120s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 891aa MW: 99119.1 Da PI: 6.2949 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.4e-24 | 135 | 235 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD+v+F Sphfalx0120s0001.1.p 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELVARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDSVLF 221 99*****************************8544444..48*********************************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 ++++++l+++++r Sphfalx0120s0001.1.p 222 I--RDDKGQLLLGIRR 235 *..5578889999998 PP | |||||||
2 | Auxin_resp | 121.1 | 8.5e-40 | 261 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a haa+t+s F+++YnPr+s+seFv++v+k++ka++++v vGmRf+m fete+ss rr++Gt++g+ dldp+rWp+S WrsLk Sphfalx0120s0001.1.p 261 ANHAAATNSRFTIFYNPRQSPSEFVIPVAKYHKAINTQVNVGMRFRMVFETEESSVRRYMGTITGIGDLDPIRWPKSDWRSLK 343 679******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.15E-49 | 125 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-42 | 128 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-22 | 134 | 235 | No hit | No description |
PROSITE profile | PS50863 | 12.844 | 135 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-23 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-22 | 135 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.3E-36 | 261 | 343 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.4E-8 | 757 | 847 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.381 | 760 | 844 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.54E-8 | 780 | 839 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence Send to blast |
MYSCPPMRLS ASNYSPPPSN MDQERRCLNS ELWHACAGPL VSLPPVASPV VYFPQGHTEQ 60 VTASTQKELE GHIPNYPNLP SRLICLLDNV TLHADLETDE VYAQMTLIPL HTSQQKDPLL 120 SQDYPKPNKQ PTDYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDYSQQP PAQELVARDL 180 HDQEWHFRHI YRGQPRRHLL TTGWSVFVSA KRLQAGDSVL FIRDDKGQLL LGIRRVHRQQ 240 TIMPSSVLSS DSMHIGVLAA ANHAAATNSR FTIFYNPRQS PSEFVIPVAK YHKAINTQVN 300 VGMRFRMVFE TEESSVRRYM GTITGIGDLD PIRWPKSDWR SLKVGWDEST AGERQQRVSV 360 WDIEPLTTPF LLCPPPPALR SKRTRGNRGD EDIDSLLKKS QMWVDGSDSL GALNFRNLAM 420 DSPWMRAAPQ QRLESSSVAS QQNEFYRHGI APPASLQEIR TGDSAAKQLH QLSSQPLQFH 480 HQQQPHAQQQ QQNQHSMHQM VDAPGPLLEL SFSGPQAQMD LGCPMRPTTS YCESDLQMGA 540 SFSLQGMLGR SQTSSPISEN NQFFNMLRPS QSAMQTPIHG MNVMVQDPQV SSPWFSTMQN 600 QNQSDPQQPM VTSRLSQVDT SPSSQMTGPF THPQHSSEVN VQAGLAELPP LPFRDNDQDA 660 DQLQADRSRL LFGFPIDQPN AGSSASPLSS RASEKTNKEQ QQNIYSGSSN ILQGSFCPPA 720 TSDPPTMASG VNIATGGLDD GGLYQRSDAW VSMQAAQPLR TFTKVTKLGM PGRSLDIRNF 780 HNYAELRSEL AHMFNLEGIL DAPVNSGWQL VFVDHESDTL LVGDDPWEEF VSCVRSIKIL 840 SPSEVSQMNQ EKFEMLDAPP MQQQQPSMSN SDQEARCTQT SAPNPQMGGP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 28 | 364 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385779.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_024385788.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_024385797.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A2K1LBN0 | 0.0 | A0A2K1LBN0_PHYPA; Auxin response factor | ||||
STRING | PP1S163_119V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0120s0001.1.p |