PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0119s0044.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 341aa MW: 36048.4 Da PI: 6.4092 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.2 | 2.2e-34 | 55 | 109 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sphfalx0119s0044.2.p 55 KQRLRWTPELHERFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 109 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.523 | 52 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-33 | 53 | 110 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-18 | 54 | 109 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-26 | 55 | 110 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-9 | 57 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-24 | 142 | 188 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MYQTTKYSPS SNLMPQRSAS QAGEPWASAS PAAGPTYSAG SPGTSGGGGS GSAAKQRLRW 60 TPELHERFVD AVTQLGGPDR ATPKGVLRVM GVQGLTIYHV KSHLQKYRLA KYIPDSLSDG 120 GTSDKKKNPA DLFPSLDATS GIQITEALRM QMEVQKRLHE QLEVQRNLQL RIEAQGKYLQ 180 QIIEEQQRLS ALTGTHSIGT DSGEAGAAPA LEPPPPIAEV SDKVEIRPLP DRTITGAPAS 240 SVSVIPTRAS ELSSQPGPQS EHIKSESVNP TTVTDLAMPS SSPIQPVTNA THIADAAVLE 300 SNAPQQTKQQ EVSPGTAETV LPFQSPVQKQ GDVGGELLLT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-26 | 55 | 112 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-26 | 55 | 112 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-26 | 55 | 112 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-26 | 55 | 112 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024394212.1 | 2e-96 | myb-related protein 2-like | ||||
Swissprot | Q9SJW0 | 6e-79 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2K1JK89 | 4e-95 | A0A2K1JK89_PHYPA; Uncharacterized protein | ||||
STRING | PP1S269_36V6.1 | 6e-96 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-78 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0119s0044.2.p |