PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0118s0030.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 662aa MW: 72207.8 Da PI: 6.4417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0118s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	231	303	2	70
trihelix 2 WtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt +e +L+ea+++ e l +k ++ +W++++++++++g++rs +qC+ kwen ++kk+++ e++ Sphfalx0118s0030.1.p 231 WTLKESIVLLEAKKREREILTGSKrnavSADEKWRAIAEYCWSQGVQRSKEQCRFKWENTMPDFKKVRDYEEE 303 **********9866665554333445999***********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.689	223	291	IPR017877	Myb-like domain
Pfam	PF13837	6.7E-9	230	303	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MRLRAKLERA LAHMSSSDHR HQQPPAEENW GGGRETSERA ATGSSSLFQA RLHDQGASAS 60 NIVAGSVAAV VQQGGAASPG SSSAASHVWQ QHDQEEDDQA HHHDAKEEAL HQPSLEYDEQ 120 AAGAAFLGAA SELERSADSL SPLPDTREIL ALGPAADREL VVLLEADQLP TRATATAGRG 180 LNSVQELQSK EMANEEAGDQ HAVEHAVTAV VGKNSKQQQP ELERVYRSGV WTLKESIVLL 240 EAKKREREIL TGSKRNAVSA DEKWRAIAEY CWSQGVQRSK EQCRFKWENT MPDFKKVRDY 300 EEEYNYHEKL GHLGDNIHNK KSYFEMDSWQ RKQLNLPPNL NRELYGIMDK LLMQKPGTGT 360 GTKLKESKGK ELQLVAHDQL DLTTVSVLEA AVVALPTGEE NTEKIQQSSS IPKGTLITRL 420 QVGTQDLGSQ GARGEMVMGE RSSSGVDQST TFRVHKDMPM PEVVKGASAR KRRKKILPEV 480 TQQEVVGLTG FGTVAPVELR TSVEIGSAST TPLPSSQAPA GVQWVGLGAS HELPPAFKQM 540 GQQQQQQQGT SEEAGNMTSS PAAKKSKGHK TKMGAAAAPS TEQQYAEIIA TTTTTTMVAE 600 KSSADYLITT LEEKKEARHQ EMVTLEREKL AANKEAMNMI AMALNNVANA FFKMADLLQR 660 S*

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MRLRAKLERA LAHMSSSDHR HQQPPAEENW GGGRETSERA ATGSSSLFQA RLHDQGASAS  60
NIVAGSVAAV VQQGGAASPG SSSAASHVWQ QHDQEEDDQA HHHDAKEEAL HQPSLEYDEQ  120
AAGAAFLGAA SELERSADSL SPLPDTREIL ALGPAADREL VVLLEADQLP TRATATAGRG  180
LNSVQELQSK EMANEEAGDQ HAVEHAVTAV VGKNSKQQQP ELERVYRSGV WTLKESIVLL  240
EAKKREREIL TGSKRNAVSA DEKWRAIAEY CWSQGVQRSK EQCRFKWENT MPDFKKVRDY  300
EEEYNYHEKL GHLGDNIHNK KSYFEMDSWQ RKQLNLPPNL NRELYGIMDK LLMQKPGTGT  360
GTKLKESKGK ELQLVAHDQL DLTTVSVLEA AVVALPTGEE NTEKIQQSSS IPKGTLITRL  420
QVGTQDLGSQ GARGEMVMGE RSSSGVDQST TFRVHKDMPM PEVVKGASAR KRRKKILPEV  480
TQQEVVGLTG FGTVAPVELR TSVEIGSAST TPLPSSQAPA GVQWVGLGAS HELPPAFKQM  540
GQQQQQQQGT SEEAGNMTSS PAAKKSKGHK TKMGAAAAPS TEQQYAEIIA TTTTTTMVAE  600
KSSADYLITT LEEKKEARHQ EMVTLEREKL AANKEAMNMI AMALNNVANA FFKMADLLQR  660
S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-21	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0118s0030.1.p