PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0118s0017.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

WRKY

Protein Properties

Length: 720aa MW: 77026 Da PI: 4.7507

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0118s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	71.4	1.3e-22	437	495	2	59
--SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++ W+KYG K++++++f r+YY+C+ ++C++kk v+ ++edp+++e+tY geH+++ Sphfalx0118s0017.1.p 437 DDGHRgWKKYGNKSIQNANFCRGYYKCSVKECNAKKTVQPTDEDPSLFEVTYVGEHTCS 495 688866***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-23	431	496	IPR003657	WRKY domain
SuperFamily	SSF118290	1.14E-20	436	496	IPR003657	WRKY domain
SMART	SM00774	3.9E-26	436	496	IPR003657	WRKY domain
Pfam	PF03106	9.2E-21	437	494	IPR003657	WRKY domain
PROSITE profile	PS50811	15.996	443	497	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MDNFREGMMR LGAGNWNQEQ CVEKVEEMLR RAIIHQEDLW GMLMLHSSDQ DHQLGPSSST 60 MMQMRDRLPG VSGENVNCDQ VCIIPPIVFR ALKAKLENSM DWSHLALCRL KEILSQTASA 120 PPCVDPAMTA PAATLVIDSS AAGIRQLAMR FRGQYEDLPI KRESRMTQSS SAVKQAPAPG 180 ISSSSSKLRL HTPLSPLHVP LIQENLSSSP HPFTAGQQLF SCFSAGRSGP STVAESPLSS 240 YLFAGIDHMN IPNSAASPTA TAAGDQSVLT SESLNLQAGD VVPMPQQLLM DSTDPWPAVH 300 ASGELFLSGN FADPVLTQEH HLQSGQSCIT SSTTCRSLDA APHDAAIRSY DQLSGAAAAG 360 AEAFKLAATR GKTENSEQSV PEASAASYIE RASLKTGNPI RPAKRERDQQ ASAEVEHKYS 420 EVQYQRLGDE GKKGIPDDGH RGWKKYGNKS IQNANFCRGY YKCSVKECNA KKTVQPTDED 480 PSLFEVTYVG EHTCSSSSNA GSAAHRRKRL QRMSIKAVTT AAGAVVATEN NDSRVFSSAV 540 NTSTIATPTT TNAGTTAAAD TSWSRDQWQI IPTTGRSSQQ QQVFTTAVTT TTITQGGSSD 600 VEEELETSIE GGGSTDSTST SCTAASDDDD DWARNLEAAA AAADEEGGDQ TDDIDSYLNG 660 SSADGSGYAL ISGYLQNDDG LNNSKHLSDS CESLWTDLMQ SSENLTAQIS NLLTIELQS*

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MDNFREGMMR LGAGNWNQEQ CVEKVEEMLR RAIIHQEDLW GMLMLHSSDQ DHQLGPSSST  60
MMQMRDRLPG VSGENVNCDQ VCIIPPIVFR ALKAKLENSM DWSHLALCRL KEILSQTASA  120
PPCVDPAMTA PAATLVIDSS AAGIRQLAMR FRGQYEDLPI KRESRMTQSS SAVKQAPAPG  180
ISSSSSKLRL HTPLSPLHVP LIQENLSSSP HPFTAGQQLF SCFSAGRSGP STVAESPLSS  240
YLFAGIDHMN IPNSAASPTA TAAGDQSVLT SESLNLQAGD VVPMPQQLLM DSTDPWPAVH  300
ASGELFLSGN FADPVLTQEH HLQSGQSCIT SSTTCRSLDA APHDAAIRSY DQLSGAAAAG  360
AEAFKLAATR GKTENSEQSV PEASAASYIE RASLKTGNPI RPAKRERDQQ ASAEVEHKYS  420
EVQYQRLGDE GKKGIPDDGH RGWKKYGNKS IQNANFCRGY YKCSVKECNA KKTVQPTDED  480
PSLFEVTYVG EHTCSSSSNA GSAAHRRKRL QRMSIKAVTT AAGAVVATEN NDSRVFSSAV  540
NTSTIATPTT TNAGTTAAAD TSWSRDQWQI IPTTGRSSQQ QQVFTTAVTT TTITQGGSSD  600
VEEELETSIE GGGSTDSTST SCTAASDDDD DWARNLEAAA AAADEEGGDQ TDDIDSYLNG  660
SSADGSGYAL ISGYLQNDDG LNNSKHLSDS CESLWTDLMQ SSENLTAQIS NLLTIELQS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	7e-15	WRKY DNA-binding protein 46

Link Out ? help Back to Top
Phytozome	Sphfalx0118s0017.1.p