PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0117s0070.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 879aa MW: 95599.2 Da PI: 7.779

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0117s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.9	4.2e-31	263	347	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+ykk+k+g+ +r++++s +++f++lea Sphfalx0117s0070.1.p 263 RWPRQETLALIKIRSEMDANFRDSGLKGPLWEDVSRKLADLGYQRSAKKCKEKFENIHKYYKKTKDGKAGRQDGKS--YRFFSELEA 347 8*******************************************************************866665..****985 PP
2	trihelix	105.5	3.8e-33	657	741	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev +Li++r++me+r++++ k+plWee+s m++ g++r++k+Ckekwen+nk+++k+ke++kkr +e+ +tcpyf+ql+ Sphfalx0117s0070.1.p 657 RWPKPEVNDLIRLRSSMETRFQEAGPKGPLWEEISGDMSRLGYNRNAKRCKEKWENINKYFRKTKESNKKR-PENAKTCPYFHQLD 741 8*******************************************************************8.99999*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0093	260	322	IPR001005	SANT/Myb domain
Pfam	PF13837	6.5E-22	262	348	No hit	No description
PROSITE profile	PS50090	6.829	262	320	IPR017877	Myb-like domain
CDD	cd12203	1.38E-31	262	327	No hit	No description
PROSITE profile	PS50090	7.05	650	714	IPR017877	Myb-like domain
SMART	SM00717	0.034	654	716	IPR001005	SANT/Myb domain
CDD	cd12203	2.21E-31	656	721	No hit	No description
Pfam	PF13837	1.4E-21	656	742	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence Send to blast
MSDSWSEDRA SPVRVHEWAP AAGGAAAAAA AVGFNKIMQS AAGAQYHHGV SDPGAPAQFV 60 LGRPLPHNIF GLSSAHHDHH HVSMSLQSPG AVSHGGAGAA AAHVQQQVAP HHQHQQQNQH 120 HHAQLQHQSQ QHQHHQLSPH PGSLHSHNLG PAQQSPSPPA PTVSFPPHPG QHSQQHQQQH 180 QTHHQTAQVH QQAPQHHHQQ QQQQQNAQQQ MVQQLGLGSG PDSPDAPSPA SYNNKQFPQP 240 LAARDAVDDE DIEDDGRGTS GNRWPRQETL ALIKIRSEMD ANFRDSGLKG PLWEDVSRKL 300 ADLGYQRSAK KCKEKFENIH KYYKKTKDGK AGRQDGKSYR FFSELEALYA GQQQQQQQQH 360 ISSATAPQAP PHDSVTSSDR RTAGNAATTG TLQQFARTGN TVMSAAGGGG GGGLVDGLEK 420 QGRIVAQRAA AAAALERTAE LSASGVTLTD SSEDDYDVPA AAGGLQQQGE NHHDLSKKKR 480 KRLDHHGKLL SSSSSKKLMS VESLVKKLMD KQEAMQRKFL EAMERREQDR IVREEAFKRQ 540 EMARVTRDHE LRAQEQALTA SRDAALVAFL QKVTGQTLQL PQIPPPQEIT AVPKPVQATM 600 TTPPPPAATV PSSTGLDQTR NHHHHQSSTL VHEADIHEDQ EQADQKDGSG SSLDPKRWPK 660 PEVNDLIRLR SSMETRFQEA GPKGPLWEEI SGDMSRLGYN RNAKRCKEKW ENINKYFRKT 720 KESNKKRPEN AKTCPYFHQL DTLYRQGVLS TPSTTKVNKL AAAAAAAVGQ PTVSEHDSDA 780 GHELLDHHPI TASLAAEHDI NAQQSDADDQ AQILSMLPAA AAPANDQGGT DTAITGRKSG 840 SVNTAADQAV QFFSSPDNGS SADQPQTSKK SGMQITPR*

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence Send to blast

MSDSWSEDRA SPVRVHEWAP AAGGAAAAAA AVGFNKIMQS AAGAQYHHGV SDPGAPAQFV  60
LGRPLPHNIF GLSSAHHDHH HVSMSLQSPG AVSHGGAGAA AAHVQQQVAP HHQHQQQNQH  120
HHAQLQHQSQ QHQHHQLSPH PGSLHSHNLG PAQQSPSPPA PTVSFPPHPG QHSQQHQQQH  180
QTHHQTAQVH QQAPQHHHQQ QQQQQNAQQQ MVQQLGLGSG PDSPDAPSPA SYNNKQFPQP  240
LAARDAVDDE DIEDDGRGTS GNRWPRQETL ALIKIRSEMD ANFRDSGLKG PLWEDVSRKL  300
ADLGYQRSAK KCKEKFENIH KYYKKTKDGK AGRQDGKSYR FFSELEALYA GQQQQQQQQH  360
ISSATAPQAP PHDSVTSSDR RTAGNAATTG TLQQFARTGN TVMSAAGGGG GGGLVDGLEK  420
QGRIVAQRAA AAAALERTAE LSASGVTLTD SSEDDYDVPA AAGGLQQQGE NHHDLSKKKR  480
KRLDHHGKLL SSSSSKKLMS VESLVKKLMD KQEAMQRKFL EAMERREQDR IVREEAFKRQ  540
EMARVTRDHE LRAQEQALTA SRDAALVAFL QKVTGQTLQL PQIPPPQEIT AVPKPVQATM  600
TTPPPPAATV PSSTGLDQTR NHHHHQSSTL VHEADIHEDQ EQADQKDGSG SSLDPKRWPK  660
PEVNDLIRLR SSMETRFQEA GPKGPLWEEI SGDMSRLGYN RNAKRCKEKW ENINKYFRKT  720
KESNKKRPEN AKTCPYFHQL DTLYRQGVLS TPSTTKVNKL AAAAAAAVGQ PTVSEHDSDA  780
GHELLDHHPI TASLAAEHDI NAQQSDADDQ AQILSMLPAA AAPANDQGGT DTAITGRKSG  840
SVNTAADQAV QFFSSPDNGS SADQPQTSKK SGMQITPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359363.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A9SJK2	0.0	A9SJK2_PHYPA; Predicted protein
STRING	PP1S85_58V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-64	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0117s0070.1.p