PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0116s0080.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 475aa    MW: 54438.4 Da    PI: 7.3123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0116s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016231253123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ C    +rk++L rH+r++
  Sphfalx0116s0080.1.p 231 FFCEFCLSFMKRKEQLARHMRKC 253
                           67*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541608.93E-2183161IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2701.1E-3687157No hitNo description
PfamPF117171.1E-1988144IPR025995RNA binding activity-knot of a chromodomain
SMARTSM002983.4E-4102160IPR000953Chromo/chromo shadow domain
CDDcd000244.47E-5107152No hitNo description
Gene3DG3DSA:2.30.30.2701.1E-36192242No hitNo description
PROSITE profilePS5172675.741197468IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557292.8E-111198469IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.303.2E-72256398IPR016181Acyl-CoA N-acyltransferase
PfamPF018533.0E-84258435IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00385309367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGSLEENAPA GLGQGIETVG GTLREEIPVA TAEYVRNPMK DATNNSKLNG RMVVTSSPPP  60
TSSPVPIVQT ENSMELSLKK RKSIPLPLEV GTRLLCKWRD GKLHPVKVIE RRKLPTGPDD  120
YQYYVHYSEF NRRLDEWVKL EQLELESVEA DADEKVEDKG GGLKMTRHQK RKIEETHAEE  180
GHEDFDAASL REHEEFTKVK NISKIELGKY EIDTWYFSPF PPEYSDCNKL FFCEFCLSFM  240
KRKEQLARHM RKCDLKYPPG DEIYRQGSLS MFEVDGKKNK IYGQNLCYLA KLFLDHKTLY  300
YDVDLFLFYI LCECDERGCH MVGYFSKEKH SEEGYNLACI LTLPPYQRKG YGKFLIAFSY  360
ELSKKEGKVG TPERPLSDLG LLSYRGYWTR VLLDILKKHR GNVSIKELSD MTAIKTEDVI  420
STLQSLELIQ YRKGQHVICG DPKLLERHLK AAGRGGLEVD ASKLIWTPYK EQGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_A1e-1221934721282Histone acetyltransferase KAT8
4dnc_B1e-1221934721282Histone acetyltransferase KAT8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone acetyltransferase which may be involved in transcriptional activation. {ECO:0000250|UniProtKB:Q9LXD7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374032.10.0putative MYST-like histone acetyltransferase 1
SwissprotQ8LI340.0MYST1_ORYSJ; Putative MYST-like histone acetyltransferase 1
TrEMBLA0A2K1KNZ90.0A0A2K1KNZ9_PHYPA; Histone acetyltransferase
STRINGPP1S13_111V6.10.0(Physcomitrella patens)