PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0116s0076.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 15513 Da PI: 9.6945 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.3 | 1.5e-44 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Cak+Cv+apyfp ++p+kfanvhk+FGasnv k+lk+lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+ + Sphfalx0116s0076.1.p 8 PCAACKLLRRRCAKGCVFAPYFPPDEPQKFANVHKVFGASNVNKMLKDLPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQVIH 96 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+l +++++ Sphfalx0116s0076.1.p 97 LQAQLTVANAK 107 *****999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.143 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MPGSGMSPCA ACKLLRRRCA KGCVFAPYFP PDEPQKFANV HKVFGASNVN KMLKDLPVHQ 60 RGDAVSSMVY EANARVRDPV YGCVGAISSL QQQVIHLQAQ LTVANAKILS MQMHNQSSHA 120 GPNVVGSLQG LQPGLPTSCA AAAAAVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-53 | 1 | 109 | 5 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-53 | 1 | 109 | 5 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024397549.1 | 2e-70 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397551.1 | 2e-70 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397552.1 | 2e-70 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397553.1 | 2e-70 | LOB domain-containing protein 4-like | ||||
Refseq | XP_024397554.1 | 2e-70 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 1e-60 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2K1JE80 | 5e-69 | A0A2K1JE80_PHYPA; Uncharacterized protein | ||||
STRING | PP1S66_56V6.1 | 9e-70 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0116s0076.1.p |
Publications ? help Back to Top | |||
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