PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0116s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 370aa MW: 40491.9 Da PI: 7.2007 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.3 | 4.1e-41 | 26 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 aCaaCk++rrkC++dC+lapyfp +qpk+f nvhkl+G+snvl++l+ ++++ereda++s+v+eA+ r +dPv+G++gvi+ lq+ql + Sphfalx0116s0037.1.p 26 ACAACKHQRRKCTADCPLAPYFPPDQPKRFHNVHKLYGVSNVLRILRMVEPSEREDAVKSIVFEADTREKDPVHGCLGVISLLQNQLTK 114 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++la ++++ Sphfalx0116s0037.1.p 115 LREDLAGVRDQ 125 *****998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.567 | 25 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-39 | 26 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MTGGAGGLGA GSSASQYSSG TSTNAACAAC KHQRRKCTAD CPLAPYFPPD QPKRFHNVHK 60 LYGVSNVLRI LRMVEPSERE DAVKSIVFEA DTREKDPVHG CLGVISLLQN QLTKLREDLA 120 GVRDQLYRLH HQQQQQQQHT ASILNQSTLY ATTHHHQRSI PAASVSAAHL QLQQQQLYGS 180 TSTSSHANFH DDSTTQANSF FDAKLSLQQP VAAYLHDHSQ LRYNAAASLE STPLHDMFGH 240 QLKVEGVTTD NVLNATLHPT STIASSSVDR SAAAAAGPGM SKLHNYGAAL VQQEQEEDVV 300 VGVVASLQQQ QHRQEHHDSM TMSCGNASLT AHLPRRRSPY SNVQMIEEDD DPHHHQKKKI 360 RDFLQDPSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 24 | 128 | 9 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 24 | 128 | 9 | 113 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-38 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0116s0037.1.p |