PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0116s0025.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WOX
Protein Properties Length: 281aa    MW: 30552.1 Da    PI: 5.6479
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0116s0025.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18106166257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           r+R++++++ql+ Le+lF + + +p++++++e+ ++l    ++ e++V++WFqNr+a+ k+
  Sphfalx0116s0025.2.p 106 RQRWSPSQSQLQYLERLFDQgTGTPNKQRIKEIVAELsqhgQIAETNVYNWFQNRKARAKR 166
                           89*****************99**************************************97 PP
2Wus_type_Homeobox93.22.3e-30105168265
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           +r+RW+P+++Q++ Le+l+++G+ tPnk++i++i aeL+++G+i ++NV++WFQNrkaR ++kq
  Sphfalx0116s0025.2.p 105 TRQRWSPSQSQLQYLERLFDQGTGTPNKQRIKEIVAELSQHGQIAETNVYNWFQNRKARAKRKQ 168
                           789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-1699170IPR009057Homeodomain-like
PROSITE profilePS5007114.22102167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-14103169IPR009057Homeodomain-like
SMARTSM003893.7E-12104171IPR001356Homeobox domain
CDDcd000864.90E-11106168No hitNo description
PfamPF000463.0E-16106166IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVDMVPLGSA GHGQAVSSGG VGPMVDSASP LDSSLHQPSY AQCPGQVMTE EQLETLRRQI  60
SVYATICKQL VEMHKASLSQ QSSLPGAQNV SLDQLTGTLS LKTTTRQRWS PSQSQLQYLE  120
RLFDQGTGTP NKQRIKEIVA ELSQHGQIAE TNVYNWFQNR KARAKRKQQL VSLKDGESEV  180
DTDVESPKEK WPRQQEVDMV QDDSGMMGDM NGTGSSDGGG HAVQPQHCDP QDATSSVLLL  240
SEAKPNISSV SRGPGFESLN VPQGLKEDRD GRQRCPLTMC *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385206.11e-108WUSCHEL-related homeobox 8-like
RefseqXP_024385208.11e-108WUSCHEL-related homeobox 8-like
RefseqXP_024385209.11e-108WUSCHEL-related homeobox 8-like
SwissprotQ5QMM32e-50WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A2K1K3411e-107A0A2K1K341_PHYPA; Uncharacterized protein
STRINGPP1S224_106V6.11e-102(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.19e-51WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]