PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0116s0025.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WOX
Protein Properties Length: 285aa    MW: 30942.6 Da    PI: 5.6479
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0116s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18110170257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           r+R++++++ql+ Le+lF + + +p++++++e+ ++l    ++ e++V++WFqNr+a+ k+
  Sphfalx0116s0025.1.p 110 RQRWSPSQSQLQYLERLFDQgTGTPNKQRIKEIVAELsqhgQIAETNVYNWFQNRKARAKR 170
                           89*****************99**************************************97 PP
2Wus_type_Homeobox93.22.4e-30109172265
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           +r+RW+P+++Q++ Le+l+++G+ tPnk++i++i aeL+++G+i ++NV++WFQNrkaR ++kq
  Sphfalx0116s0025.1.p 109 TRQRWSPSQSQLQYLERLFDQGTGTPNKQRIKEIVAELSQHGQIAETNVYNWFQNRKARAKRKQ 172
                           789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-16103174IPR009057Homeodomain-like
PROSITE profilePS5007114.22106171IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-14107173IPR009057Homeodomain-like
SMARTSM003893.7E-12108175IPR001356Homeobox domain
PfamPF000463.1E-16110170IPR001356Homeobox domain
CDDcd000863.77E-11110172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVDMVPLGSA GHGQAVSSGG VGPMVDSASP LDSSLHQPSY AQCPGQVMTE EQLETLRRQI  60
SVYATICKQL VEMHKASLSQ QSSLPGMMAG AQNVSLDQLT GTLSLKTTTR QRWSPSQSQL  120
QYLERLFDQG TGTPNKQRIK EIVAELSQHG QIAETNVYNW FQNRKARAKR KQQLVSLKDG  180
ESEVDTDVES PKEKWPRQQE VDMVQDDSGM MGDMNGTGSS DGGGHAVQPQ HCDPQDATSS  240
VLLLSEAKPN ISSVSRGPGF ESLNVPQGLK EDRDGRQRCP LTMC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385206.11e-112WUSCHEL-related homeobox 8-like
RefseqXP_024385208.11e-112WUSCHEL-related homeobox 8-like
RefseqXP_024385209.11e-112WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-51WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A2K1K3411e-111A0A2K1K341_PHYPA; Uncharacterized protein
STRINGPP1S224_106V6.11e-106(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-52WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]