PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0116s0023.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 503aa    MW: 55328.6 Da    PI: 6.0582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0116s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08357398955
                           HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            r RR++i +++  L +l+P  +      K++ a++L +A+eY+k Lq
  Sphfalx0116s0023.1.p 357 ARHRRKKISERIRVLEKLIPGgN------KMDTATMLDEAIEYVKFLQ 398
                           699*****************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.399348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.63E-10351402No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13353406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14353409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-12354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5358398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MLLDAPLFED NALIALGTHY QQIMNSAGPA PMSWSTTDPT VLLSDHSWRY RAAPRAPVFS  60
SDMTNNLLHQ GTQVVDGYNP LQSSSDLADP FSDPICELSH WLQFYSLANQ DQHNAHPCTP  120
PFLPQAMSAQ PTTCLQEAKS SGSGNMTREN WRVEPDMPPL ADCGPEVYKA NPDFSAEESS  180
SVVSDGGVLR DYNVHSHRLD GMQHENLIPL PDSWIVHNQA EGDDATLQFG GHTVLKQLNP  240
FDMLPWSKTS AVPPFRRNRS FSSLNDRERA FWPALDDPLQ FLLTTDMTRR VEFPLNHVSS  300
AELAYKEVPG RPLAWQGMSG AYDPVEPAKR PGKLAADQGK SNSKMTVTSV EPQSVAARHR  360
RKKISERIRV LEKLIPGGNK MDTATMLDEA IEYVKFLQLQ VQLLEALGDM AESTRPVSLT  420
PSSALAKGMK RKAPNAGGDV DQSCSAALPV ISVATSPLIL SEVIQQQLFR KKLCLVSVRQ  480
CPPRSVPSSR DVFAEFCQGL SI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-20bHLH family protein