PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0114s0027.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HRT-like

Protein Properties

Length: 622aa MW: 69490.2 Da PI: 10.4898

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0114s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	39	1.4e-12	374	402	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG++l+ G +C++ Pv+gRKRC+ HK+ + Sphfalx0114s0027.1.p 374 CGALLDTGLPCNALPVRGRKRCRMHKDLK 402 **************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MGLVIPEELA HVARPQTRRP VAAADQRWKR EECAYVKHDK LFSDWKILVG PEDWKGHAAG 60 KEDVEKYRAH NLPGSNWGPG VYELGLAMPE WTAMNEQRIG LKKKEKKLRP QNVMVVYVGN 120 AEHIRQRLQR YGEAGGHLEG SRSTRLFVIK DDGFRVSSWK KCELQQNRGA AQQLVHHERI 180 AAAPTDSEYF YKSSSTEHGV RKSSRGPRLF SEVFTLGCAI AFRWTATGNK AAAEKATAEL 240 LEVFDYAWNR GGNGPRRSRE VIEKTLVARQ SPAGVTRSLC HCFRTKSRST WLQPFRVNRR 300 VGVSIAARKP TESRDPPLEA AGSSWSTSPC FSRRMKAGDF WMLLKSRAHL LPGLGSRTAK 360 NCEFTKLDIP IERCGALLDT GLPCNALPVR GRKRCRMHKD LKSTKRRGSK QQQQQQGHAT 420 ATITGQQIRN YQLGSWLHEH SVGSRNTRSA KECLKGTSQH EAAAMSHNSR RSDVMEPQSR 480 SFTISCLPLF LLRAAGMRKH ECKTQDVIRS RVSLSFSTWL KTSRSGMMTG TEITAVADAA 540 TAAAAAAIKL KTSAATSDHT SNNNMMFSKV ELQGLQNEDL FELIVHNIYG SSTHCHVPPI 600 THTMMQQNCP SHYSIHAEIG I*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MGLVIPEELA HVARPQTRRP VAAADQRWKR EECAYVKHDK LFSDWKILVG PEDWKGHAAG  60
KEDVEKYRAH NLPGSNWGPG VYELGLAMPE WTAMNEQRIG LKKKEKKLRP QNVMVVYVGN  120
AEHIRQRLQR YGEAGGHLEG SRSTRLFVIK DDGFRVSSWK KCELQQNRGA AQQLVHHERI  180
AAAPTDSEYF YKSSSTEHGV RKSSRGPRLF SEVFTLGCAI AFRWTATGNK AAAEKATAEL  240
LEVFDYAWNR GGNGPRRSRE VIEKTLVARQ SPAGVTRSLC HCFRTKSRST WLQPFRVNRR  300
VGVSIAARKP TESRDPPLEA AGSSWSTSPC FSRRMKAGDF WMLLKSRAHL LPGLGSRTAK  360
NCEFTKLDIP IERCGALLDT GLPCNALPVR GRKRCRMHKD LKSTKRRGSK QQQQQQGHAT  420
ATITGQQIRN YQLGSWLHEH SVGSRNTRSA KECLKGTSQH EAAAMSHNSR RSDVMEPQSR  480
SFTISCLPLF LLRAAGMRKH ECKTQDVIRS RVSLSFSTWL KTSRSGMMTG TEITAVADAA  540
TAAAAAAIKL KTSAATSDHT SNNNMMFSKV ELQGLQNEDL FELIVHNIYG SSTHCHVPPI  600
THTMMQQNCP SHYSIHAEIG I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	400	406	LKSTKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-32	effector of transcription2

Link Out ? help Back to Top
Phytozome	Sphfalx0114s0027.1.p