PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0111s0027.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 459aa    MW: 49830.5 Da    PI: 4.7181
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0111s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17105157456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++++ eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0111s0027.1.p 105 KRRLSFEQVRSLERNFELENKLEPEKKMQLAKELGLQPRQVAVWFQNRRARWK 157
                           4578889*********************************************9 PP
2HD-ZIP_I/II120.67.8e-39103195193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrls eqv++LE++Fe e+kLepe+K++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L ++y++lk+e +++  e+e+L++
  Sphfalx0111s0027.1.p 103 EKKRRLSFEQVRSLERNFELENKLEPEKKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSQEYNRLKTEYDAVVLEKEKLES 191
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elke 93 
                           e+++
  Sphfalx0111s0027.1.p 192 EIQH 195
                           9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.76E-1989161IPR009057Homeodomain-like
PROSITE profilePS5007117.50899159IPR001356Homeobox domain
SMARTSM003895.6E-14102163IPR001356Homeobox domain
PfamPF000464.4E-15104157IPR001356Homeobox domain
CDDcd000861.61E-16104160No hitNo description
Gene3DG3DSA:1.10.10.606.2E-19106166IPR009057Homeodomain-like
PRINTSPR000311.3E-5130139IPR000047Helix-turn-helix motif
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5139155IPR000047Helix-turn-helix motif
PfamPF021833.6E-14159199IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MATTMRGFGA QNVMLMRNDS TPGSDSLVAM LASCTPMGLQ VPGHSSVGGL EDAVVGCGMK  60
RSFSYPSFVD HGSSSPGLGG EEALMGLDDG MDDCSPCSMS NVEKKRRLSF EQVRSLERNF  120
ELENKLEPEK KMQLAKELGL QPRQVAVWFQ NRRARWKTKQ LERDYEVLSQ EYNRLKTEYD  180
AVVLEKEKLE SEIQHLTGKS THKSSNMADQ SRDQYENVEP SAISGVKIKT TDHTGAKLSR  240
GADLQQVQVE VKSESMIRTD ASTEVVLKSR PADSQWKQQA STSPTVEIPA SILKAEKLEQ  300
QQTTSTSASN SSEILDTDSP RTIDNYKLQQ VSIITAAADQ QAGAGTVTSC QHLNNPGSAD  360
DQCFMDPDPA SCLLQVAAAG GGDDLMCAAG AADRVLSSPQ LQYHRSASVA ANIKLEVDAA  420
VAAGNCSNYQ AEYVDQSCNY FLSQLDDKAG ATPWWDWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-42homeobox 1