PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0111s0025.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 673aa MW: 74772.5 Da PI: 7.6256

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0111s0025.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	5e-10	577	623	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h +ErrRR + ++ f Lr+l+P + K +Ka+iL A+ Y+k+Lq Sphfalx0111s0025.2.p 577 NHMLAERRRRVKQKENFTVLRKLVPIiS------KADKASILGDAILYLKDLQ 623 7999********************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.4E-12	66	152	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	6.28E-16	572	647	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.291	573	622	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.19E-12	576	627	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-16	577	643	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-7	577	623	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	579	628	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MAGHVQRSSG AYDPHLQHQL QALLHRLGWS YAALWSLNPR SRTFVWKGGY YRVVNPNGNA 60 GQETWNAQRF YSTYKSCSFA PGQGCVGLAH TEGRYLWQSG KPSFQYTALM QSQFLMAASI 120 QTVLCIPCLD SVLELGTTSL ETENLPLVEQ IQYFLSNKIM APPPEFPSNA SMQETTSAAT 180 QSGTPTTHFS STASLTQPSS YQPAVGNSIQ FPSRTGLITS EDLNQPELNS PLAVPEQTWR 240 SASMSNLRNG MFIQQTEQAC QEKDISKRMA VADSDVLATE WRLARSDLHT QSLLMNSRYR 300 SMSDTPSTSI SGNEDVSQVS TSPDHPVSQV ATSQHGDHAS PSNSSSSARR SSPSQEPQKP 360 DLSLNNGTSL QHLRSPGGGP DCNIEQALSL MLSGGQNPYT DEHWRPLDFT SNTPETLRRV 420 AVQEGSDQDV ALQTCKFSNI RTREEQMNRS PQGQFKRWKN NRIVATMPNI HDDRSPNQFV 480 LRRCFQMLKN LPEVPGVVTQ LKDAGSIQDC ESIQTSLPDQ RLEPESNLRI NHHGLAEQQQ 540 VQTESLHAVT GGVAPRSVRN ISAARGVPAG HDEAAVNHML AERRRRVKQK ENFTVLRKLV 600 PIISKADKAS ILGDAILYLK DLQSKIQELE HSNQESKQRY QELEIRYKEI EQQNKELKGN 660 RFMSSAISQP CP*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MAGHVQRSSG AYDPHLQHQL QALLHRLGWS YAALWSLNPR SRTFVWKGGY YRVVNPNGNA  60
GQETWNAQRF YSTYKSCSFA PGQGCVGLAH TEGRYLWQSG KPSFQYTALM QSQFLMAASI  120
QTVLCIPCLD SVLELGTTSL ETENLPLVEQ IQYFLSNKIM APPPEFPSNA SMQETTSAAT  180
QSGTPTTHFS STASLTQPSS YQPAVGNSIQ FPSRTGLITS EDLNQPELNS PLAVPEQTWR  240
SASMSNLRNG MFIQQTEQAC QEKDISKRMA VADSDVLATE WRLARSDLHT QSLLMNSRYR  300
SMSDTPSTSI SGNEDVSQVS TSPDHPVSQV ATSQHGDHAS PSNSSSSARR SSPSQEPQKP  360
DLSLNNGTSL QHLRSPGGGP DCNIEQALSL MLSGGQNPYT DEHWRPLDFT SNTPETLRRV  420
AVQEGSDQDV ALQTCKFSNI RTREEQMNRS PQGQFKRWKN NRIVATMPNI HDDRSPNQFV  480
LRRCFQMLKN LPEVPGVVTQ LKDAGSIQDC ESIQTSLPDQ RLEPESNLRI NHHGLAEQQQ  540
VQTESLHAVT GGVAPRSVRN ISAARGVPAG HDEAAVNHML AERRRRVKQK ENFTVLRKLV  600
PIISKADKAS ILGDAILYLK DLQSKIQELE HSNQESKQRY QELEIRYKEI EQQNKELKGN  660
RFMSSAISQP CP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0111s0025.2.p