PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0111s0025.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 675aa MW: 75031.8 Da PI: 7.7754

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0111s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	5e-10	579	625	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h +ErrRR + ++ f Lr+l+P + K +Ka+iL A+ Y+k+Lq Sphfalx0111s0025.1.p 579 NHMLAERRRRVKQKENFTVLRKLVPIiS------KADKASILGDAILYLKDLQ 625 7999********************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.4E-12	66	152	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	6.41E-16	574	649	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.291	575	624	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.11E-12	578	629	No hit	No description
Pfam	PF00010	2.8E-7	579	625	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-16	579	645	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	581	630	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MAGHVQRSSG AYDPHLQHQL QALLHRLGWS YAALWSLNPR SRTFVWKGGY YRVVNPNGNA 60 GQETWNAQRF YSTYKSCSFA PGQGCVGLAH TEGRYLWQSG KPSFQYTALM QSQFLMAASI 120 QTVLCIPCLD SVLELGTTSL ETENLPLVEQ IQYFLSNKIM APPPEFPSNA SMQETTSAAT 180 QSGTPTTHFS STASLTQPSS YQPAVGNSIQ FPSRTGLITS EDLNQPELNS PLAVPEQTWR 240 CRSASMSNLR NGMFIQQTEQ ACQEKDISKR MAVADSDVLA TEWRLARSDL HTQSLLMNSR 300 YRSMSDTPST SISGNEDVSQ VSTSPDHPVS QVATSQHGDH ASPSNSSSSA RRSSPSQEPQ 360 KPDLSLNNGT SLQHLRSPGG GPDCNIEQAL SLMLSGGQNP YTDEHWRPLD FTSNTPETLR 420 RVAVQEGSDQ DVALQTCKFS NIRTREEQMN RSPQGQFKRW KNNRIVATMP NIHDDRSPNQ 480 FVLRRCFQML KNLPEVPGVV TQLKDAGSIQ DCESIQTSLP DQRLEPESNL RINHHGLAEQ 540 QQVQTESLHA VTGGVAPRSV RNISAARGVP AGHDEAAVNH MLAERRRRVK QKENFTVLRK 600 LVPIISKADK ASILGDAILY LKDLQSKIQE LEHSNQESKQ RYQELEIRYK EIEQQNKELK 660 GNRFMSSAIS QPCP*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MAGHVQRSSG AYDPHLQHQL QALLHRLGWS YAALWSLNPR SRTFVWKGGY YRVVNPNGNA  60
GQETWNAQRF YSTYKSCSFA PGQGCVGLAH TEGRYLWQSG KPSFQYTALM QSQFLMAASI  120
QTVLCIPCLD SVLELGTTSL ETENLPLVEQ IQYFLSNKIM APPPEFPSNA SMQETTSAAT  180
QSGTPTTHFS STASLTQPSS YQPAVGNSIQ FPSRTGLITS EDLNQPELNS PLAVPEQTWR  240
CRSASMSNLR NGMFIQQTEQ ACQEKDISKR MAVADSDVLA TEWRLARSDL HTQSLLMNSR  300
YRSMSDTPST SISGNEDVSQ VSTSPDHPVS QVATSQHGDH ASPSNSSSSA RRSSPSQEPQ  360
KPDLSLNNGT SLQHLRSPGG GPDCNIEQAL SLMLSGGQNP YTDEHWRPLD FTSNTPETLR  420
RVAVQEGSDQ DVALQTCKFS NIRTREEQMN RSPQGQFKRW KNNRIVATMP NIHDDRSPNQ  480
FVLRRCFQML KNLPEVPGVV TQLKDAGSIQ DCESIQTSLP DQRLEPESNL RINHHGLAEQ  540
QQVQTESLHA VTGGVAPRSV RNISAARGVP AGHDEAAVNH MLAERRRRVK QKENFTVLRK  600
LVPIISKADK ASILGDAILY LKDLQSKIQE LEHSNQESKQ RYQELEIRYK EIEQQNKELK  660
GNRFMSSAIS QPCP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0111s0025.1.p