PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0111s0018.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 1329aa    MW: 147470 Da    PI: 6.2897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0111s0018.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-08511554245
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           g+W++ Ed +l+   ++ G+ +W++Ia+ +g++Rt  qc  r+q
  Sphfalx0111s0018.2.p 511 GPWSKSEDMKLLSIAQRQGMVDWASIAQQLGTRRTVAQCFVRFQ 554
                           89*************************************99998 PP
2Myb_DNA-binding46.49.1e-15563607147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT+eEd++l  av+++G + W ++a+ m  gR + qc +rw ++
  Sphfalx0111s0018.2.p 563 RSAWTPEEDLQLRAAVEKFGED-WQAVAASME-GRIGSQCAHRWSDV 607
                           789*****************99.*********.***********765 PP
3Myb_DNA-binding49.41.1e-15615661148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rgrW +eEd +l+ av  +G + Wk+Ia +++ gR++ qc++rw ++l
  Sphfalx0111s0018.2.p 615 RGRWQPEEDTRLKWAVSVYGARGWKRIATHVP-GRSEIQCRERWCNVL 661
                           89******************************.***********9975 PP
4Myb_DNA-binding45.41.9e-14669710345
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            WT+eE  +l+++v ++G+++W+++a++mg  Rt++qc  +w 
  Sphfalx0111s0018.2.p 669 DWTPEENIRLKELVVKHGSHRWAAVASEMG-CRTDNQCFRHWK 710
                           5*****************************.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4413506IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-4416432IPR009057Homeodomain-like
PROSITE profilePS500905.645416500IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-4476508IPR009057Homeodomain-like
PROSITE profilePS500908.966505557IPR017877Myb-like domain
SMARTSM007171.2E-7509559IPR001005SANT/Myb domain
PfamPF002491.8E-7510555IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-18511604IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-11512570IPR009057Homeodomain-like
CDDcd001671.92E-6512557No hitNo description
PROSITE profilePS5129421.362558612IPR017930Myb domain
SMARTSM007173.3E-12562610IPR001005SANT/Myb domain
PfamPF002497.2E-14563607IPR001005SANT/Myb domain
CDDcd001671.19E-9565604No hitNo description
Gene3DG3DSA:1.10.10.602.4E-15571614IPR009057Homeodomain-like
PROSITE profilePS5129423.33613665IPR017930Myb domain
SMARTSM007176.2E-13614663IPR001005SANT/Myb domain
PfamPF002491.2E-13615661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-17616661IPR009057Homeodomain-like
CDDcd001679.59E-11617661No hitNo description
SuperFamilySSF466899.17E-23641712IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-16662711IPR009057Homeodomain-like
SMARTSM007174.1E-11666715IPR001005SANT/Myb domain
PROSITE profilePS5129414.854666717IPR017930Myb domain
PfamPF002495.2E-13669710IPR001005SANT/Myb domain
CDDcd001672.10E-11670712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1329 aa     Download sequence    Send to blast
MFSTREGKKC GRGKALGKPG FPGTERDEDD EEDEEEEGFD EDFMKQMDAL KRACQMHVGD  60
DHSRDASFGA VKPAIDLSKE EDEDDNALLL SVARAFYNTD SISFGVSKVS DRSSFGASKS  120
KPAYNDDNND DEEGDDDDDD DDDILRSVEK IYGGLDLTKA TGLSLPNLDK VHQDGNQEVY  180
GCPGIKSAVA GPKVGSAANG TSLQGGGIIT GDDSEVGFEG DKHTLEKEGR SQPAMDTTGA  240
LKGFLPAQWG GDEDLDDPIW TSTASGNGEV PHVIGTVGYH DRVWESKRES ELLQKDLPES  300
LQAVSDALQK NRQCQRMLRN LLLQVELKQR ENKEMYRRAC TLLDFEGFCK RKFSGFSMEL  360
GNPSVKLIST KPHTSITNGE VAQPGELKVK GPLPNVDVEI HRKLYSQFPV DSNVRKWTQK  420
ERESLIKGVR QQVQECRLRT AMEEFSFDNE AQDFNEWLRI SGEREVTAED IREALPFINW  480
DEVAYRYVVD RLPSDCKIRW INCEDPLVET GPWSKSEDMK LLSIAQRQGM VDWASIAQQL  540
GTRRTVAQCF VRFQRSLNAS ILRSAWTPEE DLQLRAAVEK FGEDWQAVAA SMEGRIGSQC  600
AHRWSDVLQP GLHRRGRWQP EEDTRLKWAV SVYGARGWKR IATHVPGRSE IQCRERWCNV  660
LDPSIKIEDW TPEENIRLKE LVVKHGSHRW AAVASEMGCR TDNQCFRHWK ALNLEHEVSF  720
QKDTALRRAI FASNFVGRAK ERPQLGLQDF QPPLQAVDNV LASRCRRVKS KKFASKVVNG  780
KFNPTFVPRK KRSLGLFTAN EDCFSNGDVP LSTEEQNRAS VPKRRRKSSW LDVTVFGFLH  840
DEVAEADLND MNEHVGVCNV EAIEKEADGF VKVVGHAKRM GLLTSQEMPQ IHVAGKGQLQ  900
RGQKRNAKDG QADGSLTVSE LEAAVPGLQV NLLGTGGNKA RAERKTLNSK GHKRKSKLAS  960
GSDDVPADSE TLATAPAIHS NGRSSRTKSG HGENTQSSEG KKWKRKRKEK QGYPSDNEVA  1020
DSDTLASALM LYSRNCRQGC RVTNNMIQKM QNMRAKRKET QDIRTDGGLL CTELTAPMAQ  1080
EHFADESNSR NQGSAFGISS CVQNNAVELG AESIAFTSEL AIEEGAENPA GFEGLPSPEG  1140
QRIEEQQGAQ SADVPGLFVP VSRVLEICPQ LGNGPKSQGI AQSDRGSSAN KSLQGDVRLH  1200
SETFVRGFGL QGTQQDQVNI GNAKDSSEPS SLQRSSMSND PGCGPVLEGS GDVPPPTVLH  1260
TYQRRRKREL CVRENAPVGK GQGQQLVTQS EDSTLIQETR SPLYNLRKAP KKKLWDEEIF  1320
LVGKRGHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-264827116156MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-264827116156MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1821827PKRRRKS
210041009RKRKEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392638.10.0uncharacterized protein LOC112290523
TrEMBLA0A2K1JLB90.0A0A2K1JLB9_PHYPA; Uncharacterized protein
STRINGPP1S52_54V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-105myb domain protein 4r1