PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0110s0074.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 532aa    MW: 59998.6 Da    PI: 5.8942
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0110s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.47.1e-22159238286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           Wt+ e+l+Li++r ++e r+ ++ +k  lW+e++++++++ ++r ++qC++kwe+l   yk++++g+k+r  e     p++d+l+
  Sphfalx0110s0074.1.p 159 WTRPETLHLIRLRAQLEPRFAKSGRKTELWDEIAEALQREHISRDAQQCRDKWEKLTAGYKEVRDGAKDR--E---DNPFYDELH 238
                           ********************************************************************97..3...448999986 PP
2trihelix63.54.7e-20442521286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W++ evl+Li++r eme r++++ + +plW+e ++ ++ +g++r  kqC+ekw++l  +yk +  g++++     ++ pyf +l+
  Sphfalx0110s0074.1.p 442 WKRAEVLQLIKLRGEMEGRFGKSTRHAPLWDELAELLSVQGIKRDGKQCREKWDKLMAEYKDVSGGKRDQ-----RESPYFAELT 521
                           ****************************************************************999984.....3459999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.444151215IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4154215IPR009057Homeodomain-like
SMARTSM007170.0077155217IPR001005SANT/Myb domain
PfamPF138375.7E-19157239No hitNo description
CDDcd122032.67E-22157222No hitNo description
PROSITE profilePS500908.177434498IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-5435499IPR009057Homeodomain-like
SMARTSM007170.19438500IPR001005SANT/Myb domain
PfamPF138379.1E-17440522No hitNo description
CDDcd122031.81E-21440504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MFSSQSSLPT HLRRAPQATL FHAIQVAEHN GNDEDEDEDE YGADPTPSSS AEPTTTAKEE  60
EEEGRGAEGE LLEQTVSQSS PTQSRDRFIE TSSVAPSSAA AVHSMSMSTL LALSSVQQPE  120
LKLLGENNNN RTSGTAATAD EEEQKKQRER EHKKRSKNWT RPETLHLIRL RAQLEPRFAK  180
SGRKTELWDE IAEALQREHI SRDAQQCRDK WEKLTAGYKE VRDGAKDRED NPFYDELHPL  240
LSGKPMKRER ERDEYVRDRD SVGGELAKDL SHELGSEAAG REKDYSDGGK RGEGLKYEEE  300
DEEEEGDARG ARARKKKRAQ KYMAITDVAA VQYVLETMIT RQQKLFRELL ESMERKEMVR  360
EQMRQEKEEK WQAEERAHRS VFHNAMIVLT QKLVGESIGG GGATATTTTT TTTTAAATTA  420
PTIMVVGSPE ATQGPKRRSK NWKRAEVLQL IKLRGEMEGR FGKSTRHAPL WDELAELLSV  480
QGIKRDGKQC REKWDKLMAE YKDVSGGKRD QRESPYFAEL TSILGRFSEA G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.11e-175trihelix transcription factor GTL1-like
TrEMBLA0A2R6WAH20.0A0A2R6WAH2_MARPO; Uncharacterized protein
STRINGPP1S224_109V6.11e-174(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.16e-13Trihelix family protein