PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0105s0048.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 782aa    MW: 87631.1 Da    PI: 9.3738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0105s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.3e-16109204199
                           EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           f+k+l    ++ ++++ +pk f+e h  +++  +s  ++le +sg  W + + y  ++g + +++GWk F  +n+Lk gD ++F+l+++
  Sphfalx0105s0048.1.p 109 FLKTL--TENSLNSWMHIPKAFLELHssEIQGSSSHRVKLEGPSGDIWLIAM-YMMGKGPHGFRQGWKAFITDNHLKKGDRLLFTLIST 194
                           67777..44455568*********9999555557889***************.777777899*************************99 PP

                           SEE..EEEEE-S CS
                    B3  88 sefelvvkvfrk 99 
                           s f  +v+vf++
  Sphfalx0105s0048.1.p 195 SHF--TVRVFDE 204
                           999..9999986 PP
2B349.76.8e-16403493498
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            ++ps+v +  +l+lp +fa ++ ++k ++++++lede g  W  +   + ++    l++GW +F +++ L+egD++vF+ ++ +    
  Sphfalx0105s0048.1.p 403 LMKPSHVYRGFWLCLPIEFA-RIWLPK-KDTDVILEDEAGFGWPARWLSNENR--QGLSGGWANFSRDHCLEEGDMCVFEIVDAQHWII 487
                           5899****************.775554.6679***************555555..55***********************887766667 PP

                           EEEEE- CS
                    B3  93 vvkvfr 98 
                           +v++fr
  Sphfalx0105s0048.1.p 488 LVHIFR 493
                           777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-21101205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-21102205IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.52107205IPR003340B3 DNA binding domain
CDDcd100171.45E-18107203No hitNo description
PfamPF023623.3E-13109204IPR003340B3 DNA binding domain
SMARTSM010199.4E-13109205IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-21392493IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-24393493IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-21398493No hitNo description
SMARTSM010191.1E-10400495IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731400495IPR003340B3 DNA binding domain
PfamPF023621.1E-14403493IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MDGGMKLFDH PQQTLQLTEM LETIVSNPNI RAEVEKWPKE QQGVQCDTGA QVQETAAAAT  60
TAVRPAQCSA AMEPGDDVKV VKEEPVTRGA AKRLNETDKV SSSTKRPSFL KTLTENSLNS  120
WMHIPKAFLE LHSSEIQGSS SHRVKLEGPS GDIWLIAMYM MGKGPHGFRQ GWKAFITDNH  180
LKKGDRLLFT LISTSHFTVR VFDENGLEAV AAANSKLATN NTAQFVREVG GGRSLHNCKV  240
RKERDNNTGD NDTPATYSKE HVKLPAPDDD DDGLPENDVK RLRGEPNPSL TQCPDATRCT  300
RRSKAPVTRL HDTKQAAAKR RRAAEPCSRG AAAAPGTKKE VWKLSSSKPS NWSGGGQQME  360
KFGPGFFSKT WISQRQPVTE TEREQAMIAA HALQTQNPSV VLLMKPSHVY RGFWLCLPIE  420
FARIWLPKKD TDVILEDEAG FGWPARWLSN ENRQGLSGGW ANFSRDHCLE EGDMCVFEIV  480
DAQHWIILVH IFRVVDVKIV PGSRDDGKGH YKLVRGDGCH SSTKTAKTKA QLASKKNLNR  540
TKNPTKRHVW RAPRLDQVTR KQQQRSRGVL KVPIQELSCK TTTTHADGMT TTKAAAAFDE  600
IDIKPKVNNK LEPVAIPKIP TPTTNNYCIP FATVKIEKEM VTPGIDMKPN VEQLQFEAQE  660
LNPSPYDLRR NNHNVFNNNN NNTGSCFEEK PKIVVASSRI LKSAENRPRM YYRVSRLIDR  720
RKVENGELEF KVELEQGPSA VLPKEQQQQH PPSWTATKDE EGYWWVPYSQ FSSDFRSCSI  780
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1636749416142B3 domain-containing transcription factor VRN1
4i1k_B2e-1636749416142B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-21B3 family protein