PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0105s0026.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 962aa    MW: 104338 Da    PI: 4.9901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0105s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11720766455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h++ Er RR+ri+  ++ L +llP +     kK + ++iL+kA++YI++L+
  Sphfalx0105s0026.1.p 720 KHKMKERDRRSRIKAEINALDSLLPAS-----KKKDTVSILTKAIHYIRQLK 766
                           7*************************9.....89999*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-1058212IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.96716765IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-11719770No hitNo description
SuperFamilySSF474596.8E-12719776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13719776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9720765IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10722771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MSASWSGESS SSFGLHELSQ QELYDVPAAS EDDPASAVEV DASVAGAAVV VQELNWKELL  60
QVLVENWSWL LYAVVWKLNP HNRAIVWHQG KFNGGNLQPP GALLQQHDPA AESRRLEAIF  120
YTVYKSCTFT ISPSSGYAAR ALFQESPLWW TNDMPRLVTE ERKDRFLQQS GIKTMVCLPG  180
RGSDGNIYCL EIASTHLILE TSELLQTFKQ LFVSGSSVFP SLSPLENVVL LPAAGGSSSS  240
SRGGHFEIAA AAAAAWFHAY NYGTAAEVPR EVPAPHAFGN RMQSPSWDDH ELGILDPDDD  300
HEEIASLQQQ QEVFTQLESM DSAAAGSSTA AADAISNFMQ LQPTMALDSL IMQAYQNLDQ  360
LDSETADPAA AVAALQHPPA MSSVINFEAL FDTVFGTNSD PAIVSSSCND DDDDQRQDLE  420
PFHDLVQQQH HQNITLGHHD GHELAQQSSA AISTNPYEIM YSDPELQSPA ADASTSAATS  480
VRPAAQPHSC LPDRFPRATD QLVVDPAMDL HHNASFLDLD AEPDHSAVKN PFDPHRQQQQ  540
QNPSREQCSP FKSLEPSRRL SKRRRLDAVD NYMQRSETAS GIFGTAAAGV GPSSTAPPPP  600
RPRQSMIELW KSLSRRIQES DRIQRVEQRV QETLMRSSSS SRDAHAEDTS AVVLQQLQLQ  660
GAAGAAAVSR STSDDLLPAP GRGLFDTVSR DVLDQLQTYN IPADWQAPVA HVDQAQIAEK  720
HKMKERDRRS RIKAEINALD SLLPASKKKD TVSILTKAIH YIRQLKDQIA AVRVEKAGSA  780
TFLQQQTHDR PAVVQAAAAA AAGPASSSSF SSINNLTCCS TRVAVRPAEA HVIADGASTS  840
RDLVIDVKSR NNPQTLIHIL STVRDSALEV GSLSSDDAGV IQGRMAFSLT VPVPSSLQQT  900
PLYCDKVKEA VEREILQNIA AHDMTSSRLN APSAASPDSE TPTETLTPSP GVKKHKGMSE  960
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1561565KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-08bHLH family protein