PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0103s0035.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 386aa    MW: 41838.4 Da    PI: 6.5512
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0103s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52e-06343438
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                          + C+ ++   +  +C+ +  +lC +C  + H g       H+
  Sphfalx0103s0035.1.p  3 KLCEACHASSAVVYCRADAAYLCVSCDGKVH-GanklasrHE 43
                          68*****999*****************9999.4466666776 PP
2zf-B_box21.83.9e-074590342
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                           ++C+ +e  ++   C+ +   lC +C + +H +       H++vp+
  Sphfalx0103s0035.1.p 45 VWMCEVCELAPAVVTCKADAAALCFSCDSDIH-SvnalarrHERVPV 90
                          689*****************************.44788888999986 PP
3CCT70.25.2e-24320363144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RYkeKrk+RkF K+irY+sRKa+AesRpR+KGrF+k++
  Sphfalx0103s0035.1.p 320 REARVMRYKEKRKNRKFVKTIRYASRKAYAESRPRIKGRFAKRT 363
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.054147IPR000315B-box-type zinc finger
PfamPF006432.2E-5344IPR000315B-box-type zinc finger
CDDcd000215.24E-6447No hitNo description
PROSITE profilePS5011910.5234390IPR000315B-box-type zinc finger
PfamPF006431.6E-54590IPR000315B-box-type zinc finger
CDDcd000214.32E-64690No hitNo description
SMARTSM003361.0E-74890IPR000315B-box-type zinc finger
PROSITE profilePS5101716.45320362IPR010402CCT domain
PfamPF062035.7E-18320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPKLCEACHA SSAVVYCRAD AAYLCVSCDG KVHGANKLAS RHERVWMCEV CELAPAVVTC  60
KADAAALCFS CDSDIHSVNA LARRHERVPV VPFFESSCPR LSVAPFKAAV VHNNASSGVV  120
AVPPPVTSGC CDLIKGDDTS VVEPASWPFP DLKRPEEAFT KDDDLDLLSS PYGLEHHYSS  180
SKVHEKEKLK TKVELLEAAE FFPEVDPYLD LDYATAMSAI QVGTDCLVPV HNHVGGPKEP  240
STVHAQSQLT SSDSELPHKD GYNHCTSSLS YTISSSSIDM GAVPDSSCSD ISPPHEGSQG  300
MLECAAPMVP PGGPGETMVR EARVMRYKEK RKNRKFVKTI RYASRKAYAE SRPRIKGRFA  360
KRTDSDAESR FPTVPDVSFG VVPTY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369143.11e-115zinc finger protein CONSTANS-LIKE 4-like
TrEMBLQ5H7P01e-114Q5H7P0_PHYPA; CONSTANS-like 1
STRINGPP1S371_27V6.11e-114(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.18e-71CONSTANS-like 4