PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0103s0005.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HB-other | ||||||||
Protein Properties | Length: 240aa MW: 26589.5 Da PI: 4.9986 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.9 | 1.3e-16 | 20 | 73 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++q+e Le+ ++ +yps e r+eL kk+gL+ +q +vWF rR k+++ Sphfalx0103s0005.3.p 20 KWKKSPSQVELLEKIYADAKYPSDEVRAELGKKTGLSAKQLQVWFTHRRHKDRR 73 7999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-16 | 5 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.84E-15 | 6 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.208 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-14 | 16 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.28E-15 | 20 | 74 | No hit | No description |
Pfam | PF00046 | 3.8E-14 | 20 | 73 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MACDDSTPVN SPEKQNSNYK WKKSPSQVEL LEKIYADAKY PSDEVRAELG KKTGLSAKQL 60 QVWFTHRRHK DRREGIDDDQ LTQPANCNNF DIDRHGLPST KRGEIDLNSR EDNKSEDGYP 120 AAVLAEEQDD DVLMAKEVNG TNVGDSDYEE IEKPKATTKR KSVPSSKEPR KPPCKSSSPK 180 SKLTSKAETV ELAAVRAVES QLNGPMREDG PPLGFEFDSP PPGAFEFMST EGMTMGLRV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 73 | RRHKDRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384481.1 | 3e-50 | homeobox-DDT domain protein RLT1-like | ||||
Refseq | XP_024384482.1 | 3e-50 | homeobox-DDT domain protein RLT1-like | ||||
TrEMBL | A0A2K1K3Q1 | 6e-49 | A0A2K1K3Q1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S89_188V6.1 | 1e-49 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 4e-23 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0103s0005.3.p |