PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0103s0001.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 630aa MW: 66416.1 Da PI: 6.8898

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0103s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	168	226	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ek+++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk++ Sphfalx0103s0001.1.p 168 EKIVTCPRCDSLDTKFCYYNNYNINQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHN 226 7889*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-27	165	224	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-32	169	225	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	171	225	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	173	209	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MSKSLQWTMK VEEQEVGAAA GDVPIVTSVA GTTKMDPGFK LFGKTIAVAS AAAVYAFSDA 60 GADAGALFGK RAVHGATAPI CSQKNGCAGS SIALTEVEQN LDDLRSSSGS DSGMDNNSNP 120 VLKTRCSLGP SGAETYKDLA RSLDQAVTTH TTEEEGEADD KMQQKQLEKI VTCPRCDSLD 180 TKFCYYNNYN INQPRHFCKN CQRYWTAGGT LRNVPVGAGR RKNKHNGAHG PLQSSSDGEM 240 VEAVCQEPVQ IDLSDSRQEQ ASQKASPLKI PQPRHLGQMA DRSSPPLLSS PGGSTDSCLT 300 VNMSSPFSLH LSGPVSCHTF ASTHNKMSFQ SASDEMGMKL SSDSPTRLGQ KIKTPCSMNG 360 ALISGEITAG PDMVDSGKED AASSLTGPVH TVIRDGHGFQ HQISSAMYNQ SMPAGDLGGW 420 TSNGSPFSFF SGAWPYGYNV AWNGVPPMPS TSPFCTPTPG SLGCSPPGPN FASWCPAPGT 480 LWTGAHWAPG IPGTSGVSGV VSDTNKSFAV CDAASKVPGV MTVSGTSGVP WDPQGWSLPT 540 PGATAGKRVS PEGGKAESIW GQKLMRVDYD NKSSGWSNRV GIKSDPDVID TGNLFKGFHP 600 KIENQSTTGK PFYKPHVFVN TMQFQETTT*

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MSKSLQWTMK VEEQEVGAAA GDVPIVTSVA GTTKMDPGFK LFGKTIAVAS AAAVYAFSDA  60
GADAGALFGK RAVHGATAPI CSQKNGCAGS SIALTEVEQN LDDLRSSSGS DSGMDNNSNP  120
VLKTRCSLGP SGAETYKDLA RSLDQAVTTH TTEEEGEADD KMQQKQLEKI VTCPRCDSLD  180
TKFCYYNNYN INQPRHFCKN CQRYWTAGGT LRNVPVGAGR RKNKHNGAHG PLQSSSDGEM  240
VEAVCQEPVQ IDLSDSRQEQ ASQKASPLKI PQPRHLGQMA DRSSPPLLSS PGGSTDSCLT  300
VNMSSPFSLH LSGPVSCHTF ASTHNKMSFQ SASDEMGMKL SSDSPTRLGQ KIKTPCSMNG  360
ALISGEITAG PDMVDSGKED AASSLTGPVH TVIRDGHGFQ HQISSAMYNQ SMPAGDLGGW  420
TSNGSPFSFF SGAWPYGYNV AWNGVPPMPS TSPFCTPTPG SLGCSPPGPN FASWCPAPGT  480
LWTGAHWAPG IPGTSGVSGV VSDTNKSFAV CDAASKVPGV MTVSGTSGVP WDPQGWSLPT  540
PGATAGKRVS PEGGKAESIW GQKLMRVDYD NKSSGWSNRV GIKSDPDVID TGNLFKGFHP  600
KIENQSTTGK PFYKPHVFVN TMQFQETTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	4e-33	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0103s0001.1.p