PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0101s0045.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 644aa    MW: 67880.9 Da    PI: 9.1259
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0101s0045.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32282339260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK+vkgse+prsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+g+Hnh+k
  Sphfalx0101s0045.2.p 282 EDGYNWRKYGQKQVKGSEYPRSYYKCTQANCPMKKKVERSH-DGQVTEIVYKGDHNHPK 339
                           7****************************************.***************85 PP
2WRKY103.61.1e-32459517159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Sphfalx0101s0045.2.p 459 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDVKAVITTYEGKHNHD 517
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28279340IPR003657WRKY domain
SuperFamilySSF1182901.28E-25279340IPR003657WRKY domain
SMARTSM007741.0E-35281339IPR003657WRKY domain
PROSITE profilePS5081124.501282340IPR003657WRKY domain
PfamPF031061.0E-25282338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-37444519IPR003657WRKY domain
SuperFamilySSF1182905.89E-29451519IPR003657WRKY domain
PROSITE profilePS5081138.193454519IPR003657WRKY domain
SMARTSM007741.3E-38459518IPR003657WRKY domain
PfamPF031061.7E-25460517IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MLRKPTPSRP QATVSMRASY STTTSTNTGT TSTSETNNGR DNNVLGGGLL YRGGGGGGGA  60
GIQSPMSSMV SGFLADQVEQ DMESSRSLAA RGAANTSSSS SSAGVVAAAA GSAEAGGGAP  120
RPPSSSVRFG SLPPSRIPIP RSTGYLTIPP GLSPTTLFDS SPVLLSTSQS EPSPTTGTFP  180
LGVPTFFNPS VSTKPAIITT EPSSKDKVSA AAADQGFVFK PFVKPVPQNA MSRMASSLVQ  240
AHGQQQQQQQ NGPDSEQTSP GSEQDHSLLP TVLPPFPERP SEDGYNWRKY GQKQVKGSEY  300
PRSYYKCTQA NCPMKKKVER SHDGQVTEIV YKGDHNHPKP QPTRRLSLSG GPGAAGFASI  360
VKNEGGGAEQ DGLDSSRAGR LAPSLSFTLG ATGATEPSSP STSDDEGEEG SKLSAEDGDD  420
DEPDSKRRRK DKKVEAVPVS RTIREPRVVV QTTSDVDILD DGYRWRKYGQ KVVKGNPHPR  480
SYYKCTNVGC PVRKHVERAS TDVKAVITTY EGKHNHDVPA ARNSGNNTLS QNIAPVIPAA  540
TSLQDQGAQF VNSKFGHVLD DGSFKREKFG AEMDSGMRTG MATRGLAANG EVPISASLGH  600
SEFRDGSTVQ GRDTFIHEGS FGARPKQEQP ESTSRSTLIA SST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38282520878Probable WRKY transcription factor 4
2lex_A7e-38282520878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426431RRRKDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368160.11e-171WRKY transcription factor SUSIBA2-like isoform X2
TrEMBLA0A2K1L2S71e-170A0A2K1L2S7_PHYPA; Uncharacterized protein
STRINGPP1S135_80V6.11e-171(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.24e-97WRKY family protein