PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0101s0045.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 703aa    MW: 73910.5 Da    PI: 8.9544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0101s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32341398260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK+vkgse+prsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+g+Hnh+k
  Sphfalx0101s0045.1.p 341 EDGYNWRKYGQKQVKGSEYPRSYYKCTQANCPMKKKVERSH-DGQVTEIVYKGDHNHPK 398
                           7****************************************.***************85 PP
2WRKY103.41.2e-32518576159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Sphfalx0101s0045.1.p 518 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDVKAVITTYEGKHNHD 576
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-25338399IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-28338399IPR003657WRKY domain
SMARTSM007741.0E-35340398IPR003657WRKY domain
PROSITE profilePS5081124.501341399IPR003657WRKY domain
PfamPF031061.1E-25341397IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-37503578IPR003657WRKY domain
SuperFamilySSF1182906.67E-29510578IPR003657WRKY domain
PROSITE profilePS5081138.193513578IPR003657WRKY domain
SMARTSM007741.3E-38518577IPR003657WRKY domain
PfamPF031061.9E-25519576IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MLRKPTPSRP QATVSMRASY STTTSTNTGT TSTSETNNGR DNNVLGGGLL YRGGGGGGGA  60
GIQSPMSSMV SGFLADQVEQ DMESSRSLAA RGAANTSSSS SSAGVVAAAA GSAEAGGGAP  120
RPPSSSVRFG SLPPSRIPIP RSTGYLTIPP GLSPTTLFDS SPVLLSTSQS EPSPTTGTFP  180
LGVPTFFNPS VSTKPAIITT EPSSKDKVSA AAADQGFVFK PFVKPVPQNA MSRMASSLSN  240
FGASQQQAHA LTEMHQAQAQ QALPSSSALS VSAQLPPVTT AMPSSVSLNV SSLQVVQVQA  300
HGQQQQQQQN GPDSEQTSPG SEQDHSLLPT VLPPFPERPS EDGYNWRKYG QKQVKGSEYP  360
RSYYKCTQAN CPMKKKVERS HDGQVTEIVY KGDHNHPKPQ PTRRLSLSGG PGAAGFASIV  420
KNEGGGAEQD GLDSSRAGRL APSLSFTLGA TGATEPSSPS TSDDEGEEGS KLSAEDGDDD  480
EPDSKRRRKD KKVEAVPVSR TIREPRVVVQ TTSDVDILDD GYRWRKYGQK VVKGNPHPRS  540
YYKCTNVGCP VRKHVERAST DVKAVITTYE GKHNHDVPAA RNSGNNTLSQ NIAPVIPAAT  600
SLQDQGAQFV NSKFGHVLDD GSFKREKFGA EMDSGMRTGM ATRGLAANGE VPISASLGHS  660
EFRDGSTVQG RDTFIHEGSF GARPKQEQPE STSRSTLIAS ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38341579878Probable WRKY transcription factor 4
2lex_A5e-38341579878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485490RRRKDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368159.10.0WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_024368161.10.0WRKY transcription factor SUSIBA2-like isoform X3
TrEMBLA0A2K1L2S70.0A0A2K1L2S7_PHYPA; Uncharacterized protein
STRINGPP1S135_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-94WRKY DNA-binding protein 33