PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0100s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ARF
Protein Properties Length: 890aa    MW: 97064 Da    PI: 6.4425
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0100s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.34e-25135236199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD+v+F
  Sphfalx0100s0020.1.p 135 FCKTLTASDTSTHGGFSIPRRAAEKVfprldytQQPPAQ--ELVARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDSVLF 221
                           99*****************************96555555..8*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++++l+++++r+
  Sphfalx0100s0020.1.p 222 I--RDDKGQLLLGIRRA 236
                           *..5588999****997 PP

2Auxin_resp112.93e-37261344183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a haa+t+s F+++YnPr+s+seFv++++k+++a+  ++ +vGmRf+m fete+s  rr++Gt++g+ d+dp+rWpnS+WrsLk
  Sphfalx0100s0020.1.p 261 ANHAAATNSRFTIFYNPRQSPSEFVIPLAKYHNAIVnCPATVGMRFRMVFETEESTIRRYMGTITGIGDIDPMRWPNSHWRSLK 344
                           679******************************98659********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-43125250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-22134235No hitNo description
PROSITE profilePS5086313.267135237IPR003340B3 DNA binding domain
PfamPF023625.7E-23135236IPR003340B3 DNA binding domain
SMARTSM010191.2E-23135237IPR003340B3 DNA binding domain
PfamPF065073.0E-33261344IPR010525Auxin response factor
PROSITE profilePS5174524.865759842IPR000270PB1 domain
SuperFamilySSF542771.57E-7777837No hitNo description
PfamPF023094.6E-7804846IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MYSSMRLAAA GQAPEQATGG GTVVERRSLN SELWHACAGP LVGLPAVGSR VVYFPQGHTE  60
QVAASTQKEA DAHIPNYPSL PSRLICLLDN VTLHADVETD EVYAQMTLIP TSNSQESPFS  120
GSELAAASKQ PTEYFCKTLT ASDTSTHGGF SIPRRAAEKV FPRLDYTQQP PAQELVARDL  180
HDQEWHFRHI YRGQPRRHLL TTGWSVFVSA KRLQAGDSVL FIRDDKGQLL LGIRRATRQQ  240
TIMPSSVLSS DSMHIGVLAA ANHAAATNSR FTIFYNPRQS PSEFVIPLAK YHNAIVNCPA  300
TVGMRFRMVF ETEESTIRRY MGTITGIGDI DPMRWPNSHW RSLKVGWDES TAGEKQRRVS  360
LWEIEPLTAP FLLCPPIALR SKRPRGFQEE EDLELLMKKQ LWSDSNDALS NLNFQCLAMD  420
SPWMCLQQQQ RPELTLPSPP NENYRALAAA ALQEMRSRDS SNKQLLAQAP MQMWQQQQPP  480
PQAHQQQQLK QGMHQMGGVV PAGPLLQLPG SQPQSPMDLG GGVSSQAVSR YGEADLDMSS  540
SPSMSPSFAL QSMLGRLPTS GPLCPGGDNG AGHYSSILQS NQNALQGSNF VARDSQVSAP  600
WVSTLQSPTQ SDTQPVVTSR LGRVDNSASS GVPGAFGEPG LHRGLAGLPP AAFGYRDIGH  660
DHPGDRSHLL FGVSIDQPLV GSAVTASLES RSFGKCKDPQ NGFSSSTMIP GGPFCALDAP  720
ELSGLHSGIP GSATTLDEDV LNFQRNSTWG QAATPPSMRT FTKVHKLGMP GRSLDVRNFH  780
NYSELRRELA HMFKLEGLLE DPQSGWQLVF VDNEKDTLLV GDDPWEEFVT CVRSIKILSP  840
SEVTQISQEQ LEILNTQGPV QQRSASSNSE DACTQTSPSN LASGGSLDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582936551388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354360KQRRVSL
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385807.10.0auxin response factor 6-like isoform X2
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLA0A2K1LBN00.0A0A2K1LBN0_PHYPA; Auxin response factor
STRINGPP1S163_119V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]