PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0100s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 890aa MW: 97064 Da PI: 6.4425 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.3 | 4e-25 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+a++L++gD+v+F Sphfalx0100s0020.1.p 135 FCKTLTASDTSTHGGFSIPRRAAEKVfprldytQQPPAQ--ELVARDLHDQEWHFRHIYRGQPRRHLLTTGWSVFVSAKRLQAGDSVLF 221 99*****************************96555555..8*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++++l+++++r+ Sphfalx0100s0020.1.p 222 I--RDDKGQLLLGIRRA 236 *..5588999****997 PP | |||||||
2 | Auxin_resp | 112.9 | 3e-37 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a haa+t+s F+++YnPr+s+seFv++++k+++a+ ++ +vGmRf+m fete+s rr++Gt++g+ d+dp+rWpnS+WrsLk Sphfalx0100s0020.1.p 261 ANHAAATNSRFTIFYNPRQSPSEFVIPLAKYHNAIVnCPATVGMRFRMVFETEESTIRRYMGTITGIGDIDPMRWPNSHWRSLK 344 679******************************98659********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-48 | 124 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-43 | 125 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-22 | 134 | 235 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-23 | 135 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-23 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-33 | 261 | 344 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.865 | 759 | 842 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.57E-7 | 777 | 837 | No hit | No description |
Pfam | PF02309 | 4.6E-7 | 804 | 846 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 890 aa Download sequence Send to blast |
MYSSMRLAAA GQAPEQATGG GTVVERRSLN SELWHACAGP LVGLPAVGSR VVYFPQGHTE 60 QVAASTQKEA DAHIPNYPSL PSRLICLLDN VTLHADVETD EVYAQMTLIP TSNSQESPFS 120 GSELAAASKQ PTEYFCKTLT ASDTSTHGGF SIPRRAAEKV FPRLDYTQQP PAQELVARDL 180 HDQEWHFRHI YRGQPRRHLL TTGWSVFVSA KRLQAGDSVL FIRDDKGQLL LGIRRATRQQ 240 TIMPSSVLSS DSMHIGVLAA ANHAAATNSR FTIFYNPRQS PSEFVIPLAK YHNAIVNCPA 300 TVGMRFRMVF ETEESTIRRY MGTITGIGDI DPMRWPNSHW RSLKVGWDES TAGEKQRRVS 360 LWEIEPLTAP FLLCPPIALR SKRPRGFQEE EDLELLMKKQ LWSDSNDALS NLNFQCLAMD 420 SPWMCLQQQQ RPELTLPSPP NENYRALAAA ALQEMRSRDS SNKQLLAQAP MQMWQQQQPP 480 PQAHQQQQLK QGMHQMGGVV PAGPLLQLPG SQPQSPMDLG GGVSSQAVSR YGEADLDMSS 540 SPSMSPSFAL QSMLGRLPTS GPLCPGGDNG AGHYSSILQS NQNALQGSNF VARDSQVSAP 600 WVSTLQSPTQ SDTQPVVTSR LGRVDNSASS GVPGAFGEPG LHRGLAGLPP AAFGYRDIGH 660 DHPGDRSHLL FGVSIDQPLV GSAVTASLES RSFGKCKDPQ NGFSSSTMIP GGPFCALDAP 720 ELSGLHSGIP GSATTLDEDV LNFQRNSTWG QAATPPSMRT FTKVHKLGMP GRSLDVRNFH 780 NYSELRRELA HMFKLEGLLE DPQSGWQLVF VDNEKDTLLV GDDPWEEFVT CVRSIKILSP 840 SEVTQISQEQ LEILNTQGPV QQRSASSNSE DACTQTSPSN LASGGSLDR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 29 | 365 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 354 | 360 | KQRRVSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385807.1 | 0.0 | auxin response factor 6-like isoform X2 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A2K1LBN0 | 0.0 | A0A2K1LBN0_PHYPA; Auxin response factor | ||||
STRING | PP1S163_119V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0100s0020.1.p |