PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0100s0013.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C3H

Protein Properties

Length: 896aa MW: 99152.7 Da PI: 6.841

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0100s0013.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2e-07	237	261	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC a+tG C++G +C+F+H+ Sphfalx0100s0013.2.p 237 LCGSVAKTGdvnACRFGTSCHFNHD 261 9***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.056	232	263	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	236	261	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.23	276	301	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	1.9E-77	538	781	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	1.33E-66	542	856	No hit	No description
CDD	cd02801	9.62E-98	542	778	No hit	No description
Pfam	PF01207	4.9E-56	545	813	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	626	644	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MMVDIAKKTL VRTLLTFSLT SLKLSSPIVG RNSSLRDGER CRPPDCCRDL ISNPEFNRGI 60 AWEKNRQSVE HDDDLQRLGF ALGAECPPSW PCHAACDLRS LSQSLRVAIS FAAMETEHVE 120 GKSAGNGILA SGTQTMSDSA KPALESNDAY PSVEELIAKA RAPVKREYLR QSGTRVLANT 180 VVMTEETMAK LREEEGDDAE MMPSGNSIPK TSVEKKSKRQ QRRDRKEARS NKSVENLCGS 240 VAKTGDVNAC RFGTSCHFNH DLAAYLAQKP PDIPGQCPFL GGDIRCPYGY ACRYVGTHPK 300 TSSADLEGQL SKAETRDKNG PLSSIQELNN LNKGFQKLLW KNAVTFPKAD AQLGALGLLG 360 KAKKIVMKIS ANGSEKDTKQ SAPMDPAPQM SLVESLGNEI KEAIKPVSPT DLVLNNLDVE 420 LLATPVEKIS VYTQTGSLEI SLPDEVSKIS KELEPTRTGG LAGMPSSAFT SLDTEFPPQK 480 RIRTETETTE FGDDGHEIFG FRENGDEERT NREIEDDKDW KSMANEVTLP LREKKLIDFR 540 GKLYLAPLTT VGNLPFRRVC KKLGADITCG EMAMCTNLLQ GQASEWALLR RHAEEDMFGV 600 QICGAHPDTV ARAAELIERE CQVDFIDLNL GCPIDLVVNK GAGSSLLTKP ARLEQIVRAT 660 AAAIDTPLTL KVRMGYFEGR NCAHSLIPRM ARWGASAVTV HGRTRQQRYS KAADWDYVQQ 720 CVREVPDDLQ LVGNGDIFSY TEYGKHIQAC GSKLATCMIA RGALVKPWIF TEIKEQRHWD 780 ITAEERLNIL RDYVAFGLKH WGSDTKGVET TRHFLLEWLS YAHRYIPVGL LEVIPQQLNW 840 RPPNYFGRND LETLMASDSA ADWVRLTELV LGPPPSNFTF SPKHKSNAYD KAENG*

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MMVDIAKKTL VRTLLTFSLT SLKLSSPIVG RNSSLRDGER CRPPDCCRDL ISNPEFNRGI  60
AWEKNRQSVE HDDDLQRLGF ALGAECPPSW PCHAACDLRS LSQSLRVAIS FAAMETEHVE  120
GKSAGNGILA SGTQTMSDSA KPALESNDAY PSVEELIAKA RAPVKREYLR QSGTRVLANT  180
VVMTEETMAK LREEEGDDAE MMPSGNSIPK TSVEKKSKRQ QRRDRKEARS NKSVENLCGS  240
VAKTGDVNAC RFGTSCHFNH DLAAYLAQKP PDIPGQCPFL GGDIRCPYGY ACRYVGTHPK  300
TSSADLEGQL SKAETRDKNG PLSSIQELNN LNKGFQKLLW KNAVTFPKAD AQLGALGLLG  360
KAKKIVMKIS ANGSEKDTKQ SAPMDPAPQM SLVESLGNEI KEAIKPVSPT DLVLNNLDVE  420
LLATPVEKIS VYTQTGSLEI SLPDEVSKIS KELEPTRTGG LAGMPSSAFT SLDTEFPPQK  480
RIRTETETTE FGDDGHEIFG FRENGDEERT NREIEDDKDW KSMANEVTLP LREKKLIDFR  540
GKLYLAPLTT VGNLPFRRVC KKLGADITCG EMAMCTNLLQ GQASEWALLR RHAEEDMFGV  600
QICGAHPDTV ARAAELIERE CQVDFIDLNL GCPIDLVVNK GAGSSLLTKP ARLEQIVRAT  660
AAAIDTPLTL KVRMGYFEGR NCAHSLIPRM ARWGASAVTV HGRTRQQRYS KAADWDYVQQ  720
CVREVPDDLQ LVGNGDIFSY TEYGKHIQAC GSKLATCMIA RGALVKPWIF TEIKEQRHWD  780
ITAEERLNIL RDYVAFGLKH WGSDTKGVET TRHFLLEWLS YAHRYIPVGL LEVIPQQLNW  840
RPPNYFGRND LETLMASDSA ADWVRLTELV LGPPPSNFTF SPKHKSNAYD KAENG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	6e-29	539	775	27	258	tRNA-dihydrouridine synthase B
6ei9_B	6e-29	539	775	27	258	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024374675.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A2K1KNF4	0.0	A0A2K1KNF4_PHYPA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	PP1S219_23V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0100s0013.2.p

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]