PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0099s0055.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 626aa MW: 65425.1 Da PI: 4.8918

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0099s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	172	231	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k +cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk++ Sphfalx0099s0055.1.p 172 PDKPAPCPRCESLDTKFCYYNNYNINQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKHV 231 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	169	229	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-32	174	230	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	176	230	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	178	214	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MSKLRKWLMK EEEEQASSPP VTADPAIKLF GRTIPVTGGG AVVDADTGEV ITDDPNCPLQ 60 KGAPPCTEEG RHAQEVGEET VQWTEDNCKA MGLGPVDELG SSLGSDEPAE AAEDEKSLKS 120 GKQETDLTVT ATGTNSVAVA TAEDSQGRSN EHKEAEEGGQ EVGGQGKNLK KPDKPAPCPR 180 CESLDTKFCY YNNYNINQPR HFCKNCQRYW TAGGTLRNVP VGAGRRKNKH VGLQARNGTM 240 PDQSVVAMVE ADSQESVQQL LPCAGSRISP LKHPQIPRQC PTLPALDASS GSSTITSIRQ 300 DHGPPDGAAF SRHASGTVPP QLYPCKDAHD ASGGEISMME GFQVAGEVHQ ITAMNGSQNG 360 VNGAGELPSE VEKKEIVDEC ASSLAEQDST TTQEAANTAV PIPLHPILQP DVGGLYRPMA 420 VGDAGVLAAG GTGGPFGFYN GAWPYGFNVG WSGTVPAGSH GVVGTGQLLS GNGMATWNIP 480 PNGVWTGAGV LPWTSLLPGM PGSPWVVPPG WGGWTVPLPW AAAVAGAPAA ASTVNGCVLP 540 ISRLPSTTIP VLGKHPRDQP EGRRVDGALW APKSLRVDDP KEAAQSSVWN ALGMPNPPDS 600 VVSGSMFKAF QPKTEAKMMA EGQPQ*

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MSKLRKWLMK EEEEQASSPP VTADPAIKLF GRTIPVTGGG AVVDADTGEV ITDDPNCPLQ  60
KGAPPCTEEG RHAQEVGEET VQWTEDNCKA MGLGPVDELG SSLGSDEPAE AAEDEKSLKS  120
GKQETDLTVT ATGTNSVAVA TAEDSQGRSN EHKEAEEGGQ EVGGQGKNLK KPDKPAPCPR  180
CESLDTKFCY YNNYNINQPR HFCKNCQRYW TAGGTLRNVP VGAGRRKNKH VGLQARNGTM  240
PDQSVVAMVE ADSQESVQQL LPCAGSRISP LKHPQIPRQC PTLPALDASS GSSTITSIRQ  300
DHGPPDGAAF SRHASGTVPP QLYPCKDAHD ASGGEISMME GFQVAGEVHQ ITAMNGSQNG  360
VNGAGELPSE VEKKEIVDEC ASSLAEQDST TTQEAANTAV PIPLHPILQP DVGGLYRPMA  420
VGDAGVLAAG GTGGPFGFYN GAWPYGFNVG WSGTVPAGSH GVVGTGQLLS GNGMATWNIP  480
PNGVWTGAGV LPWTSLLPGM PGSPWVVPPG WGGWTVPLPW AAAVAGAPAA ASTVNGCVLP  540
ISRLPSTTIP VLGKHPRDQP EGRRVDGALW APKSLRVDDP KEAAQSSVWN ALGMPNPPDS  600
VVSGSMFKAF QPKTEAKMMA EGQPQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-37	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Sphfalx0099s0055.1.p