PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0099s0033.5.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 737aa    MW: 78658.3 Da    PI: 9.4182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0099s0033.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08670718348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +WT  E   lv++v++ Ggg W+ I +        Rt+ ++k++w+++l
  Sphfalx0099s0033.5.p 670 PWTLREVMTLVEGVARCGGGKWADIKKLAFssvGYRTAVDLKDKWRNLL 718
                           8**************************98888889************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.135663722IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-12664720IPR009057Homeodomain-like
SuperFamilySSF466893.44E-15665720IPR009057Homeodomain-like
SMARTSM007171.6E-7667720IPR001005SANT/Myb domain
CDDcd116601.01E-20669719No hitNo description
PfamPF002492.2E-6670718IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MLEPTDDKSD EGPSSTTGEQ PSAANKRGAT DRLVYKLVKV GDDGSVLPAT EDEVFQSLVE  60
GSSGGRAPSY IGGSDVNEDD EDEDGSDGSL DSNEDDSDGK EDPSFPSGRE DLVAARQKLL  120
SQLEVKASQL LHPWTQKARR TKKHQDSRVV DTMLLRVDAE EQQRVSVEDQ IGTQLGHESN  180
SPGYLNAGDA IGDYKRLRRP NPKYFDSDAG TDAVPPAITV PMTLSSSVGE LIAAGTLPEK  240
QALQPSGLVA FPRTTSGWAS QQSSIRTAGT QRARTVVAQK TFARKSNKVQ VPGSVVVPAV  300
NSLSNVASLD NLSIRELHEA FRSTYGRDTS VKDKHWLKRQ ISTGWSKQRD AALNAGAHAQ  360
LSSQIDLKLR PEQQLSAEQS LPSSTAATAM VSERDTVNDT QEPGTNGVGG TQGLVTNGVN  420
SKQSPHRGLP LAVISPAEGF DASTPGSVNE MGSGGVQIAI FGEVVNTGKQ VGGKRQRKPN  480
RRYIEDEGEA RPGTVLANGS RPGPVGSAGF GMSTRLSWRT VVTNGPADLI GQSGTLRGST  540
LRNSSQTNSL QGQRTKPSNG SLKRKAQGRA AKLVKMAHSA ARAAQHDTEG TIRKVKFRLP  600
AVPGREKDGW YELNRDAGDQ VLCLLPVSSG DSTDLLQSLA SENGADAAGE QLIATVPTAN  660
GGTRRKHHRP WTLREVMTLV EGVARCGGGK WADIKKLAFS SVGYRTAVDL KDKWRNLLRA  720
SRAQLYPPKQ TVNNES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366866.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024366994.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024367079.10.0uncharacterized protein LOC112278048 isoform X1
RefseqXP_024367147.10.0uncharacterized protein LOC112278048 isoform X1
TrEMBLA0A2K1L2G60.0A0A2K1L2G6_PHYPA; Uncharacterized protein
STRINGPP1S165_67V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-23TRF-like 6