PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0099s0033.10.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | MYB_related | ||||||||
Protein Properties | Length: 756aa MW: 80288.2 Da PI: 9.6448 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3e-08 | 646 | 694 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lv++v++ Ggg W+ I + Rt+ ++k++w+++l Sphfalx0099s0033.10.p 646 PWTLREVMTLVEGVARCGGGKWADIKKLAFssvGYRTAVDLKDKWRNLL 694 8**************************98888889************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.135 | 639 | 698 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-12 | 640 | 696 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.32E-15 | 641 | 696 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-7 | 643 | 696 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.43E-21 | 645 | 695 | No hit | No description |
Pfam | PF00249 | 2.2E-6 | 646 | 694 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MLEPTDDKSD EGPSSTTGEQ PSAANKRGAT DRLVYKLVKV GDDGSVLPAT EDEVFQSLVE 60 GSSGGRAPSY IGGSDVNEDD EDEDGSDGSL DSNEDDSDGK EDPSFPSGRE DLVAARQKLL 120 SQLEVVDTML LRVDAEEQQR VSVEDQIGTQ LGHESNSPGY LNAGDAIGDY KRLRRPNPKY 180 FDSDAGTDAV PPAITVPMTL SSSVGELIAA GTLPEKQALQ PSGLVAFPRT TSGWASQQSS 240 IRTAGTQRAR TVVAQKTFAR KSNKVQVPGS VVVPAVNSLS NVASLDNLSI RELHEAFRST 300 YGRDTSVKDK HWLKRQISTG WSKQRDAALN AGAHAQLSSQ IDLKLRPEQQ LSAEQSLPSS 360 TAATAMVSER DTVNDTQEPG TNGVGGTQGL VTNGVNSKQS PHRGLPLAVI SPAEGFDAST 420 PGSVNEMGSG GVQIAIFGEV VNTGKQVGGK RQRKPNRRYI EDEGEARPGT VLANGSRPGP 480 VGSAGFGMST RLSWRTVVTN GPADLIGQSG TLRGSTLRNS SQTNSLQGQR TKPSNGSLKR 540 KAQGRAAKLV KMAHSAARAA QHDTEGTIRK VKFRLPAVPG REKDGWYELN RDAGDQVLCL 600 LPVSSGDSTD LLQSLASENG ADAAGEQLIA TVPTANGGTR RKHHRPWTLR EVMTLVEGVA 660 RCGGGKWADI KKLAFSSVGY RTAVDLKDKW RNLLRASRAQ LYPPKQGERK KQFTAAIPAN 720 ILARVRELAA LQHQVPPGAG AAGSTSRNGR SVHRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366866.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024366994.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024367079.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
Refseq | XP_024367147.1 | 0.0 | uncharacterized protein LOC112278048 isoform X1 | ||||
TrEMBL | A0A2K1L2G6 | 0.0 | A0A2K1L2G6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S165_67V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-29 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0099s0033.10.p |