PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0099s0008.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 254aa    MW: 28694.1 Da    PI: 7.7694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0099s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17653253
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                          +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa a+++a++ +
  Sphfalx0099s0008.1.p  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAAHAYDEAARLM 53
                          69******9.**********8.....334*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-32563No hitNo description
PfamPF008471.0E-10653IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-34663IPR001471AP2/ERF domain
PROSITE profilePS5103220.811663IPR001471AP2/ERF domain
SMARTSM003807.0E-39669IPR001471AP2/ERF domain
PRINTSPR003671.4E-10718IPR001471AP2/ERF domain
PRINTSPR003671.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRTQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAAHAYDEAA RLMCGVRART  60
NFPLDPNAPL QQMSANKSRK MLSATLSAKL HRWYNLAATQ ADQNMNIKQL QQQELKKNNN  120
DRRLMQQEQS LTCLCLDAEQ SKLGIWQQLT GGCRQAEANW LSRKVDFGSS CNPPDLLKPA  180
ELPSTTDDQT SRNMSEEDKF ASEMIEELLG YNNYSDQFVN LSSPSVSDSS CCSSTSWTTL  240
SQHSLEISSV PSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-18268168ATERF1
3gcc_A5e-18268168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386105.13e-84ethylene-responsive transcription factor ERF003-like
TrEMBLA9S9847e-83A9S984_PHYPA; Predicted protein
STRINGPP1S79_25V6.11e-77(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-36ERF family protein