PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0099s0007.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 642aa    MW: 68531.1 Da    PI: 6.1048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0099s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-13377423354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h + Er+RR+ +N+++++Lr+l+P++      K + a+i+  A++Y+k+L
  Sphfalx0099s0007.1.p 377 VNHFATERQRREFLNEKYQTLRSLVPNP-----SKADRASIVADAIDYVKEL 423
                           68*************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-15372437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-12377428No hitNo description
PfamPF000102.2E-10377423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14378436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-12380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MIMQHYGSAN MGYDESGYFG CPGAEAFGMD TVVIGNVDTG NSSSVDLLQG PAGSTTFSGN  60
LDRLLVSAAA NFPGLGDQLS GGIHDSGLLV DSMNLAAGAF TNELNSMSSV NFEVGSDDHS  120
LLLQEMLQQQ QQQSQPQSQI SQQAVASAWE DSLHVLQEML LLQQQQQAQQ LYHSQAAEQV  180
IFNQATTMAT PQTLDRATSG GGNYPGESEL LSLLQLPRTA FSGLQPNSSG SGYASNSRAL  240
KSSPMYNNAG LPTGCISSAA PLNTGDHFYE TRRSLHGLPL HSQQQGGVHT ASPQSSTSFF  300
HGVPRPVADT LQAGSASNNS AQVLTRQAAG AQLLVDLEQE KLDDEGKLAA SPFGSKRDGS  360
STAAGLAKGS SDQVRGVNHF ATERQRREFL NEKYQTLRSL VPNPSKADRA SIVADAIDYV  420
KELKRTVQEL QLLVQEKRRA RGLGGGHHGA GVRGLDCKRR RIMKSATDQA AVLVGSDGTA  480
AIPGSMPSCC SAGYDNMVQE GDEQQPMDTT TSTTSASNNM LGCCNHSMVL QKLGNVDSFS  540
VDAGTHLRSS WLQRTSHNGT HVDVRIVHDE VTIKVSQRRR RNCLMDVIVA LQELRLDLLQ  600
ASGANIGEHD VFFFNTKIIE GSSTFAGYIA AKLVEAVDRR P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457461KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-25bHLH family protein