PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0098s0031.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 480aa MW: 51365.3 Da PI: 5.0812

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0098s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	313	354	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri +++ Lr+l+P +K++ a++L +A++Y+k L Sphfalx0098s0031.1.p 313 AARNRRERISDRICVLRRLVPGG-----TKMDTASMLDEAIQYVKFL 354 569****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.821	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.29E-13	307	359	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-12	308	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	309	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-7	314	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MSRGGQLDVL DDLLRSSSSM SMLQSTSEIV TAGRDEDAGQ CSANSEQIDM GNQQLIHMMP 60 HVQPSLHLAA TSGASCLQQH RLPESGGSSS LRCCMQARDS HADDPSNFLA SSESEDDSLG 120 ALFLNVSSSS GGLLGSSSTM GLKRRRADEE EEEEEACIMD LRRERKSPKQ FLRQEEAEKP 180 TLDVFQEHSL AYGSTTPSLA GASTFNLNPP GHNMNAIAAA TIPGSVTQSA STLHVFAPTR 240 VSYSHDQVAG DMILQNEMQQ AASMMRAAIL FGASTLRPVQ PTTAEKNIAA ESSRTPLKRG 300 RNMRISKDPQ SVAARNRRER ISDRICVLRR LVPGGTKMDT ASMLDEAIQY VKFLKLQLQT 360 LEQLGIQGLC DDLRYDSGDA IGGSQSSTVV PEDLRAVQPF DLNSCTQVCN QGPNSSCEEP 420 GTALDATCVS PTVAASSHMS SQGVRWPQGA SSSASSMRSP FGGPAPGQIP DPLQEQFCH*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MSRGGQLDVL DDLLRSSSSM SMLQSTSEIV TAGRDEDAGQ CSANSEQIDM GNQQLIHMMP  60
HVQPSLHLAA TSGASCLQQH RLPESGGSSS LRCCMQARDS HADDPSNFLA SSESEDDSLG  120
ALFLNVSSSS GGLLGSSSTM GLKRRRADEE EEEEEACIMD LRRERKSPKQ FLRQEEAEKP  180
TLDVFQEHSL AYGSTTPSLA GASTFNLNPP GHNMNAIAAA TIPGSVTQSA STLHVFAPTR  240
VSYSHDQVAG DMILQNEMQQ AASMMRAAIL FGASTLRPVQ PTTAEKNIAA ESSRTPLKRG  300
RNMRISKDPQ SVAARNRRER ISDRICVLRR LVPGGTKMDT ASMLDEAIQY VKFLKLQLQT  360
LEQLGIQGLC DDLRYDSGDA IGGSQSSTVV PEDLRAVQPF DLNSCTQVCN QGPNSSCEEP  420
GTALDATCVS PTVAASSHMS SQGVRWPQGA SSSASSMRSP FGGPAPGQIP DPLQEQFCH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0098s0031.1.p