PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0098s0025.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HRT-like
Protein Properties Length: 562aa    MW: 62394.6 Da    PI: 10.5862
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0098s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like46.65.9e-15346375231
              HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           CGvi++ G +C++ P kgRKRC  HKGmR+
  Sphfalx0098s0025.1.p 346 CGVITDSGLPCSALPSKGRKRCLMHKGMRV 375
                           *****************************7 PP
2HRT-like45.99.5e-15519548231
              HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           CGvil+dG +C   P+k RKRC  HKGm i
  Sphfalx0098s0025.1.p 519 CGVILSDGYPCPVAPIKNRKRCLLHKGMHI 548
                           ****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd007190.00636125148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MGRLPPTNSS RRSSSSAATV VVAEPSGSRE EETEVAVAGQ LAMKQQRRLR REDCHYVKHD  60
RLFSSWKILI GPSDWKEHAA GTEGIGRYQI HNLPIDYFGP GVYELGVTVP AWLPTQHSRT  120
LSRHLRHQDV ITCYVGQAEN IRQRLQRYGQ AGAHLETPIS SGLSLIKNET QSSDLESRVL  180
SPAGDWRADN SLALKNKRRG LPQGPNLFSE VFALGSSIAF RWAATDSKAV AVQVEAELLA  240
VFDYAWNKGG NGSRRSEDIL GKLFMGCPVE DSSSCSQKSN RKRWVLFGTK RVGITVAVQK  300
PQNTNSWSKF NKLGNFCFLL KTRPQLLAAV GGKTAEFTKL DIGGHCGVIT DSGLPCSALP  360
SKGRKRCLMH KGMRVKCNPN RKSTLKGTHQ SVWQIPSISL KQKEVLTIDQ VCLPARSLCL  420
PSLSGMSKHL PLSERRCLPS LSGMSKQLPL SERRRRRSLS FNTWMKFEDI AQTNANVIGD  480
GGRNSELSDN QRMELESQRL KDKKAVGFKL PDVVRSKHCG VILSDGYPCP VAPIKNRKRC  540
LLHKGMHITR HYTQQSKHIS V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371204.11e-112protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A2K1KX461e-111A0A2K1KX46_PHYPA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-52effector of transcription2