PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0095s0062.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 455aa    MW: 50482.4 Da    PI: 7.6716
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0095s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.6e-083777539
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                           C+ ++ ++++++C  ++ +lC+ C  + H g       H++
  Sphfalx0095s0062.1.p 37 ACDVCGMQRARWYCAADEAYLCQRCDASVH-GanalarrHER 77
                          6*****************************.44667777765 PP
2CCT64.53.1e-22407450144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea++lRYkeKr+tR+F K++rYe+RK +Ae+RpR+KGrFv+++
  Sphfalx0095s0062.1.p 407 REARVLRYKEKRRTRLFCKTVRYEVRKLNAERRPRMKGRFVRRT 450
                           9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-63380IPR000315B-box-type zinc finger
CDDcd000211.91E-83680No hitNo description
PfamPF006438.7E-73677IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0823880IPR000315B-box-type zinc finger
PfamPF062033.7E-16407449IPR010402CCT domain
PROSITE profilePS5101715.567407449IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAAGAKDCSN RNNCGFTSSA VQATAVTVAM AGRICRACDV CGMQRARWYC AADEAYLCQR  60
CDASVHGANA LARRHERSRL GPTTSMYNKT SSRSCKRRRK PTKTAVQTSQ QEAPPPAAAH  120
LQAHDLVQQQ TLPLLLPSRK RSKRTRRPNP RHKNIHKEEE EEEDEVEEAE EGGAHVQEFK  180
DEFQHFAVPD GYMDSEIDFE ETMGSLMGDQ AAGNSFNGAE DHGFGKLELT GLSFSSEMVT  240
LERRGDGNSE RTMILEAATT TEGSATAGGG AAAGSPFVGV FPVKVKNEKS LAATDMSVEN  300
RSERIKEEVV EMLRCSLRGH SKEELGIPSL QLNYEDVLSA WSDQSFWTLE DGNRLQTVPD  360
HNSTHFDHSG IMEMCLVPDM SNYCGNNNTQ GLLTRSDGSS HHGGGEREAR VLRYKEKRRT  420
RLFCKTVRYE VRKLNAERRP RMKGRFVRRT PGCI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.15e-22B-box type zinc finger protein with CCT domain